Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq8682 196 6e-45 seq7398 196 6e-45 seq16876 158 1e-33 seq1209 134 2e-26 seq3112 109 6e-19 seq3977 86.0 7e-12 seq14341 84.2 3e-11 >seq8682 Length=13014 Score = 196 bits (216), Expect = 6e-45 Identities = 194/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 158369 ATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 158428 ||||| || || ||||| || || || || |||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 158429 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 158488 || ||||| || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 158489 CTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 158548 | || | || ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 158549 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGT 158608 ||| |||| |||||||| | || |||||||| ||| | | ||||| ||| ||||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 158609 ATGGAAGTTAT 158619 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 196 bits (216), Expect = 6e-45 Identities = 228/308 (74%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 160000 TTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAA 160059 || ||||| |||| || ||||| ||||| | || ||| | || ||||||| ||| Sbjct 2173 TTATTTGAGGATGAGGATGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAA 2232 Query 160060 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTT 160119 || |||||||| |||||||||||||||||||| ||||| | ||||| || ||||| ||| Sbjct 2233 GAAACTTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTT 2292 Query 160120 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA 160179 || || || || ||| | ||||| || ||||| ||||| || || | ||| |||||| Sbjct 2293 TCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATG 2352 Query 160180 TCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAG 160239 || |||| | ||||| | | || ||||| ||||| || || ||||| |||| Sbjct 2353 AGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAG 2412 Query 160240 GAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTG 160299 || ||| | | ||| ||||||||| |||||||||| ||||| ||||| || || || || Sbjct 2413 GAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTA 2472 Query 160300 AATGAAGG 160307 || |||| Sbjct 2473 AACAAAGG 2480 >seq16876 Length=31318 Score = 158 bits (174), Expect = 1e-33 Identities = 202/277 (73%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 158393 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 158450 || || ||| |||||||||| ||| | ||||||||||||||||| || || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 158451 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCAT 158510 | ||||| |||||||| | || | |||||| || | || | || ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 158511 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 158570 ||||| | || ||| || |||||||| | | ||||| |||| |||| ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 158571 ACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158630 | |||||| ||||| | | |||| ||| |||||||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 158631 ACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGA 158667 | || || |||||||| || || || ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 134 bits (148), Expect = 2e-26 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||||| ||||||||||| ||||| || | | ||||| || || ||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 158393 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 158450 || || |||||||||||||| ||| | ||||||||||| | ||| || || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 158451 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCAT 158510 ||||| ||||||| || | |||||||||||||| | || | || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 158511 TCAACCTGAACGGTTTCAACTTCAAC 158536 ||||| |||| |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3112 Length=30994 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 159670 TCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAA 159729 || || |||||||||||| || | ||| || ||| |||| ||| |||| ||||||||| Sbjct 6874 TCGTTGGTTGCTCTCCACAGTACTTTCAGACTAATAAGTTTCATGTTACGTCAATTTGAA 6933 Query 159730 ATTGCTCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 159789 || |||| | ||| | || ||||| ||||| || || ||||| || || |||| | Sbjct 6934 CTTCCTCGGTTTGTTCAACTGCGACCTTATAATGCCATCGCATTCTCGGGCCCAATTGTT 6993 Query 159790 GTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCT 159849 |||||| | | ||| | || | || ||| |||| |||| |||||||||| ||| Sbjct 6994 GTTTTTATTTCTATGTTCATGATTTCTCTACTAGGTCCGTCTGGTTGGTTCTTTGTGCCT 7053 Query 159850 AGTTTCGGGGTAGCAGCAATCTTTAGATTC 159879 ||||| || ||| ||| | ||| |||| Sbjct 7054 AGTTTTGGTATAGTAGCTGTATTTCAATTC 7083 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 158591 AACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTG 158650 ||||| ||| |||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 158651 GATCTTGCTGCT 158662 || || |||||| Sbjct 75 GACCTAGCTGCT 86 >seq14341 Length=38040 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 158396 CGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453 || |||||||||||||| ||| | ||||||||||| ||||| || || |||||||| | Sbjct 2952 CGATTGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 2893 Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTT 158481 |||| | |||||| || || |||||||| Sbjct 2892 CTGCTTCGCCTGTAGTAGGTATCTGGTT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572735711625600