Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq8682 228 9e-55 seq16876 185 1e-41 seq1209 161 1e-34 seq7398 150 2e-31 seq33924 89.7 6e-13 seq11821 89.7 6e-13 seq3977 89.7 6e-13 seq3485 89.7 6e-13 seq14314 86.0 7e-12 seq22494 84.2 2e-11 >seq8682 Length=13014 Score = 228 bits (252), Expect = 9e-55 Identities = 201/251 (80%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 160653 ATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 160712 ||||| || || |||||||| || || || |||||||||||||||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 160713 TCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCT 160772 || ||||| | || |||||||| || || ||||||||||| || || |||||||| ||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 160773 CTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTC 160832 | ||| ||||||| ||||| |||||| | || |||||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 160833 GATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGT 160892 ||| |||||||||||||| | || |||||||| || | | || |||||| ||||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 160893 ATGGAAGTTAT 160903 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 185 bits (204), Expect = 1e-41 Identities = 208/277 (75%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 160677 GGTCGTTTGATCTTCCAATATGCA--TCATTCAACAACTCCCGTTCACTTCACTTCTTCC 160734 || || ||| ||||||||||||| | ||||||||||||||||| | || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 160735 TGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCAT 160794 | || || ||||||||| | || | |||||| ||| | ||| ||||||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 160795 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGA 160854 ||||| | || ||| || |||||||| | | | ||| ||||||||| |||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 160855 ACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 160914 | |||||| |||| | | || | |||| |||||||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 160915 ACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 | || || |||||||| || ||||| ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 161 bits (178), Expect = 1e-34 Identities = 160/206 (78%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||||| ||||||||||||||||| || | | ||||| || || |||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 160677 GGTCGTTTGATCTTCCAATATGC--ATCATTCAACAACTCCCGTTCACTTCACTTCTTCC 160734 || || ||||||||||||||||| || ||||||||||| | ||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 160735 TGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCAT 160794 || || ||||||| ||| | ||||||||||| ||| | ||| ||||||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 160795 TCAACCTCAACGGTTTCAACTTCAAC 160820 ||||| | || |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq7398 Length=4807 Score = 150 bits (166), Expect = 2e-31 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 162309 TTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAA 162368 |||| ||||||| || ||||| || || | || ||| | | || || | ||| Sbjct 2173 TTATTTGAGGATGAGGATGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAA 2232 Query 162369 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTT 162428 || |||||||| |||||||||||||||||||| ||||| | ||||| || |||| ||| Sbjct 2233 GAAACTTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTT 2292 Query 162429 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA 162488 || || || || ||| | ||||| || ||||| ||||| || || | ||| |||||| Sbjct 2293 TCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATG 2352 Query 162489 TCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAG 162548 || |||| | ||||| | | | ||||| ||||| || || ||||| |||| Sbjct 2353 AGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAG 2412 Query 162549 GAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCT 162604 || || | | ||| ||||||||| | ||||| || ||||| || || || ||||| Sbjct 2413 GAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTCT 2468 >seq33924 Length=56609 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAAC-TATTCTTGTCGTGCTGG 161184 |||||| | |||||||| ||||| ||||||||||| ||| | |||||||| | || || Sbjct 50064 TACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGA-CTTACCTTATTCTTGCAGGGCAGG 50006 Query 161185 TGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTC 161244 || || ||| | || || || ||||| |||| ||| |||| || ||||| ||| ||| Sbjct 50005 CGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGACGGGTC 49946 Query 161245 CTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 ||| | |||||| || || | | || | | || || || ||| ||| || || Sbjct 49945 GTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTTCATTACCAAC 49886 Query 161305 TAGCGATTGTGTGATTCAAAC 161325 || ||||||||||| || Sbjct 49885 GGCGGACTGTGTGATTCACAC 49865 >seq11821 Length=47813 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 |||||| | || |||| || || || ||| | ||| | || ||||| | ||||| Sbjct 4320 TACATTCTCGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGAGCTGGG 4261 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 ||||||||| | ||||| ||| || | |||| || ||||| |||||||| ||| || Sbjct 4260 GCTTGCTCTACTTGTGCCGGTCAAGTAGTTTCGGGGACAGTGGACCAGTCAGACGGATCA 4201 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 |||||||| || | ||||| || || | | |||| || ||||||||||| || Sbjct 4200 TTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTTGCATATCC-ACA 4142 Query 161306 AGC-GATTGTGTGATTCAAAC 161325 | | |||||||| || || || Sbjct 4141 ATCTGATTGTGTCATCCACAC 4121 >seq3977 Length=13071 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 160875 AATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTC 160934 || |||||| |||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 160935 GACCTCGCTGCT 160946 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 >seq3485 Length=85743 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 161716 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 161775 |||| |||||||||||||| || ||||| || || | || |||| ||| ||| ||| Sbjct 21363 GGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTG 21422 Query 161776 CTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCG 161835 | | || |||||| |||| || ||||| || | ||| |||||||||||||| | | Sbjct 21423 CCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGG 21482 Query 161836 CTAGTTCCTATCTTGAGGG 161854 | ||||||||| | || || Sbjct 21483 CAAGTTCCTATTTGGAAGG 21501 >seq14314 Length=96451 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 160742 ATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCT 160801 |||||||||||| || ||||||||||| ||| | ||| ||||||| ||| | ||||| || Sbjct 62564 ATGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGTCTTTCAA-CT 62622 Query 160802 CAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTA 160850 || ||| || |||||||| || | | ||| ||||||||| |||| Sbjct 62623 TAAATGTTAAAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTA 62671 >seq22494 Length=12707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 160716 CGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTT 160775 ||||| | || |||||||| || || ||||||||||| || ||||||||||| ||| | Sbjct 7473 CGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTA 7532 Query 160776 GGTGTTAGCACCATGGCATTCAAC 160799 ||| ||||||| ||||| |||||| Sbjct 7533 GGTATTAGCACTATGGCTTTCAAC 7556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559222513537600