Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq8682 183 4e-41 seq7398 145 9e-30 seq1209 134 2e-26 seq16876 127 3e-24 seq14341 84.2 3e-11 >seq8682 Length=13014 Score = 183 bits (202), Expect = 4e-41 Identities = 191/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 181674 ATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAAC 181733 ||||| || || || ||||| ||||| || ||||||||||||||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 181734 TCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCA 181793 || ||||| | || |||||||| || || ||||||||||| || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 181794 CTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTC 181853 | || | ||||| ||||| || ||| | ||||| ||||| |||||||| ||| | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 181854 GACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGC 181913 || | ||||| ||||| | || |||||||| || | | |||||||| ||| || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 181914 ATGGAAGTCAT 181924 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 145 bits (160), Expect = 9e-30 Identities = 197/275 (72%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 183003 GCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACA 183062 ||||| ||||| | || || | | ||||| | || || || ||||| ||||| || Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 183063 GCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCAC 183122 || || || |||||||| ||||||| |||||||| ||| |||||| |||||||| || Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 183123 TTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGG 183182 ||||||||||| ||||| || || | ||| | ||| | | || |||| | |||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 183183 CTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGAT 183242 | | |||| || ||||| ||||| || || ||| || ||| | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 183243 CCTGAGTTCGAGACGTTCTACACAAAGAACATCCT 183277 ||| | || ||||| ||||| || || || || || Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCT 2468 >seq1209 Length=37697 Score = 134 bits (148), Expect = 2e-26 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTT 181697 ||||| | ||||| ||||| ||||| || | | ||||| || || || ||||| ||| Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 181698 GGTCGCTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTTCC 181755 || || |||||||||||||||||| | ||||||||||| | ||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 181756 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 181815 || || ||||||| ||| | |||||||||||||| | || | ||||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 181816 TTAACCTCAATGGATTCAACTTCAAC 181841 | ||| | ||||| | || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 127 bits (140), Expect = 3e-24 Identities = 191/270 (71%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 181696 TTGGTCGCTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTT 181753 |||| || ||| |||||||||||||| | ||||||||||| ||||| | || || || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 181754 CCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGC 181813 ||| || || ||||||||| | || | |||||| || | || | ||||| ||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGG----TAGTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 181814 ATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCT 181873 || ||| | ||| | | || |||||||| | | | | || | ||||| | ||| | Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAAT 28221 Query 181874 CAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCG 181933 | |||||| |||| | | |||| ||| ||| || | |||||| ||||| || || Sbjct 28222 TCATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACG 28281 Query 181934 CAACGCGCACAACTTCCCGCTTGATCTTGC 181963 || ||||| |||||||| || || || || Sbjct 28282 TAATGCGCAAAACTTCCCTCTAGACCTAGC 28311 >seq14341 Length=38040 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 181701 CGCTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 181758 || |||||||||||||||||| | ||||||||||| ||||| | || |||||||| | Sbjct 2952 CGATTGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 2893 Query 181759 CAGCATGGCCTGTAGTTGGAATCTGGTT 181786 | || | ||||||||| || |||||||| Sbjct 2892 CTGCTTCGCCTGTAGTAGGTATCTGGTT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614308385885440