Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq8682 192 9e-44 seq7398 138 2e-27 seq16876 136 6e-27 seq1209 131 2e-25 seq13736 84.2 3e-11 >seq8682 Length=13014 Score = 192 bits (212), Expect = 9e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 175161 ATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 175220 ||||| || || ||||| || || || || |||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 175221 TCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCA 175280 || || || | || |||||| |||| || ||||| || || ||||| ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 175281 CTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATC 175340 | ||| || ||| ||||| |||||| | ||||||||||| |||||||| ||||| | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 175341 GACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGG 175400 || | |||||| | ||| | || |||||||| ||| || ||||| | ||| |||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 175401 ATGGAAGTAAT 175411 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 138 bits (152), Expect = 2e-27 Identities = 181/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 176529 GAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCG 176588 ||||| || ||||| ||||| ||||| |||||||| ||||| ||||||| |||||||| Sbjct 2230 GAAGAAACTTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCT 2289 Query 176589 TTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGG 176648 ||| ||||| |||||| | || ||||||||||| ||||| || || | ||| | ||| Sbjct 2290 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 2349 Query 176649 GTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGC 176708 | | |||| | |||| | | |||| || ||||| ||||| || || Sbjct 2350 ATGAGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCT 2409 Query 176709 CAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTT 176768 || || ||| | | ||| ||||||||| | ||||| |||||||| || || || || || Sbjct 2410 CAGGAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTCTC 2469 Query 176769 CTTAACGAAGG 176779 | ||| |||| Sbjct 2470 TTAAACAAAGG 2480 >seq16876 Length=31318 Score = 136 bits (150), Expect = 6e-27 Identities = 188/262 (72%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 175185 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCACGCTCACTCCACTTCTTCT 175242 || || ||| |||||||||| ||| | ||||||||||| || || | || || ||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 175243 TAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCAT 175302 |||| || ||||| || | |||| |||||| || | ||| || ||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 175303 TCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGA 175362 ||||| | ||| ||| || |||||||| | ||| | || | |||||| ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 175363 ACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAA 175422 | |||||| | ||| || ||||| ||| |||||| | |||||| |||||||| | | Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 175423 ATGCACACAACTTCCCACTAGA 175444 |||| || |||||||| ||||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGA 28305 >seq1209 Length=37697 Score = 131 bits (144), Expect = 2e-25 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 175125 GGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTC 175184 ||||| | ||||| ||||| ||||| || | | | ||||| || || ||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 175185 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCACGCTCACTCCACTTCTTCT 175242 || || |||||||||||||| ||| | ||||||||||| | || | || |||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 175243 TAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCAT 175302 ||| || ||||| | || |||||||||||||||| | ||| || ||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 175303 TCAACCTCAATGGTTTCAACTTCAAC 175328 ||||| | ||||||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq13736 Length=68382 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/219 (69%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 171143 ATACATCCTAGATGCCGCAGAGGAAGCGGGTGTATATCTCCCATATTCATGTAGAGCTGG 171202 |||||| |||||| |||||||| ||| | |||| || || ||||| || || || Sbjct 10043 ATACATTCTAGATCAAGCAGAGGATTTGGGAATTGATCTTCCTTACTCATGCAGGGCAGG 9984 Query 171203 TGCTTGTTCATCCTGTGCAGGTAAGATTGTATCTGGAAAGGTGAATCAAGAAGACCAGTC 171262 |||| || || |||||||| || | ||||| || |||||| |||| ||| | | Sbjct 9983 GTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGAT--GGC 9926 Query 171263 A--TTCTTAGATGATGATCAGATCGAAGCAGGTTTCGCACTCTTA---TGTGTAGCTTAT 171317 | ||| | |||||||||||| |||| ||||| | | ||| ||||| |||||| Sbjct 9925 AGCTTCCTTGATGATGATCAGGCTGAAGAAGGTTGGG---TTTTAACTTGTGTTGCTTAT 9869 Query 171318 GCCGAATCTGATTGTGTGATTGAGACGGAAAAAGAGGAA 171356 | | || || ||| |||||||| | || |||||| Sbjct 9868 CCTCAGTCAAATGTTGTCATTGAGACCCACAAGGAGGAA 9830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729562372418240