Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq8682 168 8e-37 seq7398 158 1e-33 seq1209 134 2e-26 seq16876 114 2e-20 seq14341 84.2 3e-11 >seq8682 Length=13014 Score = 168 bits (186), Expect = 8e-37 Identities = 188/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 178542 ATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAAC 178601 ||||| || || ||||| || || || || ||||||||||||||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 178602 TCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCA 178661 || ||||| | || |||||||| || || ||||||||||| || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 178662 CTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTC 178721 | || | ||||| ||||| || ||| | ||||| ||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 178722 GACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGC 178781 || | ||||| ||||| | || || ||||| || | | |||||||| ||| || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 178782 ATGGAAGTCAT 178792 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 158 bits (174), Expect = 1e-33 Identities = 200/275 (73%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 179865 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 179924 |||||||| || | || ||| | | || || | ||||| |||||||| ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 179925 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 179984 ||||||||||| ||||| | ||||| || |||| ||||| || || || ||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 179985 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGT 180044 || || ||||| ||||| || || | ||| |||||| || |||| | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 180045 CTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGAT 180104 | | | ||||| ||||| || || ||||| |||||| || | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 180105 CCCGAGTTTGAGACCTTCTACACCAAGAACATTCT 180139 || | |||||||| ||||| ||||| || ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCT 2468 >seq1209 Length=37697 Score = 134 bits (148), Expect = 2e-26 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 178565 ||||||| ||||| ||||| ||||| || | | ||||| || || ||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 178566 GGTCGTTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTTCC 178623 || || |||||||||||||||||| | ||||||||||| | ||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 178624 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 178683 || || ||||||| ||| | |||||||||||||| | || | ||||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 178684 TTAACCTCAATGGATTCAACTTCAAC 178709 | ||| | ||||| | || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 114 bits (126), Expect = 2e-20 Identities = 187/268 (70%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 178566 GGTCGTTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTTCC 178623 || || ||| |||||||||||||| | ||||||||||| ||||| | || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 178624 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 178683 | || || ||||||||| | || | |||||| || | || | ||||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGG----TAGTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 178684 TTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCA 178743 | ||| | ||| | | || |||||||| | | | || | ||||| | ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 178744 ACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCA 178803 | || ||| |||| | | |||| ||| ||| || | |||||| ||||| || || | Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 178804 ACGCGCACAACTTCCCGCTTGATCTTGC 178831 | ||||| |||||||| || || || || Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGC 28311 >seq14341 Length=38040 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 178569 CGTTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 178626 || |||||||||||||||||| | ||||||||||| ||||| | || |||||||| | Sbjct 2952 CGATTGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 2893 Query 178627 CAGCATGGCCTGTAGTTGGAATCTGGTT 178654 | || | ||||||||| || |||||||| Sbjct 2892 CTGCTTCGCCTGTAGTAGGTATCTGGTT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605704716570240