Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= NC_026928.1
Length=189418
Score E
Sequences producing significant alignments: (Bits) Value
seq8682 168 8e-37
seq7398 158 1e-33
seq1209 134 2e-26
seq16876 114 2e-20
seq14341 84.2 3e-11
>seq8682
Length=13014
Score = 168 bits (186), Expect = 8e-37
Identities = 188/251 (75%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 178542 ATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAAC 178601
||||| || || ||||| || || || || ||||||||||||||||| |||||||||
Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019
Query 178602 TCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCA 178661
|| ||||| | || |||||||| || || ||||||||||| || || |||||||||||
Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079
Query 178662 CTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTC 178721
| || | ||||| ||||| || ||| | ||||| ||||| |||||||| || | |
Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139
Query 178722 GACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGC 178781
|| | ||||| ||||| | || || ||||| || | | |||||||| ||| ||
Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199
Query 178782 ATGGAAGTCAT 178792
|||||||| ||
Sbjct 6200 ATGGAAGTTAT 6210
>seq7398
Length=4807
Score = 158 bits (174), Expect = 1e-33
Identities = 200/275 (73%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 179865 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 179924
|||||||| || | || ||| | | || || | ||||| |||||||| |||||||||
Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253
Query 179925 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 179984
||||||||||| ||||| | ||||| || |||| ||||| || || || ||| | |||
Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313
Query 179985 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGT 180044
|| || ||||| ||||| || || | ||| |||||| || |||| | |||||
Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373
Query 180045 CTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGAT 180104
| | | ||||| ||||| || || ||||| |||||| || | | ||| ||||||
Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433
Query 180105 CCCGAGTTTGAGACCTTCTACACCAAGAACATTCT 180139
|| | |||||||| ||||| ||||| || |||||
Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCT 2468
>seq1209
Length=37697
Score = 134 bits (148), Expect = 2e-26
Identities = 154/206 (75%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 178565
||||||| ||||| ||||| ||||| || | | ||||| || || ||||| || ||
Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561
Query 178566 GGTCGTTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTTCC 178623
|| || |||||||||||||||||| | ||||||||||| | ||| | || |||||||
Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621
Query 178624 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 178683
|| || ||||||| ||| | |||||||||||||| | || | ||||| ||| | |
Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681
Query 178684 TTAACCTCAATGGATTCAACTTCAAC 178709
| ||| | ||||| | || ||||||
Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707
>seq16876
Length=31318
Score = 114 bits (126), Expect = 2e-20
Identities = 187/268 (70%), Gaps = 6/268 (2%)
Strand=Plus/Plus
Query 178566 GGTCGTTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTTCC 178623
|| || ||| |||||||||||||| | ||||||||||| ||||| | || || ||||
Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107
Query 178624 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 178683
| || || ||||||||| | || | |||||| || | || | ||||| ||||| |
Sbjct 28108 TAGCTGCTTGGCCTGTAATAGG----TAGTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163
Query 178684 TTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCA 178743
| ||| | ||| | | || |||||||| | | | || | ||||| | ||| |
Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223
Query 178744 ACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCA 178803
| || ||| |||| | | |||| ||| ||| || | |||||| ||||| || || |
Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283
Query 178804 ACGCGCACAACTTCCCGCTTGATCTTGC 178831
| ||||| |||||||| || || || ||
Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGC 28311
>seq14341
Length=38040
Score = 84.2 bits (92), Expect = 3e-11
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 178569 CGTTTGATCTTCCAATATGCT--TCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 178626
|| |||||||||||||||||| | ||||||||||| ||||| | || |||||||| |
Sbjct 2952 CGATTGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 2893
Query 178627 CAGCATGGCCTGTAGTTGGAATCTGGTT 178654
| || | ||||||||| || ||||||||
Sbjct 2892 CTGCTTCGCCTGTAGTAGGTATCTGGTT 2865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605704716570240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |