Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq8682 197 2e-45 seq16876 158 1e-33 seq7398 145 8e-30 seq1209 143 3e-29 seq3485 93.3 5e-14 seq3977 86.0 7e-12 seq14341 84.2 2e-11 >seq8682 Length=13014 Score = 197 bits (218), Expect = 2e-45 Identities = 195/252 (77%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 159071 TATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAA 159130 |||||| || || |||||||| || || || |||||||||||||| || |||||||| Sbjct 5959 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA 6018 Query 159131 CTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 159190 ||| ||||| || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 6019 CTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGC 6078 Query 159191 CCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCT 159250 | || | || ||||| |||||| | || |||||||| |||||||| || | | Sbjct 6079 TTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGT 6138 Query 159251 TGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGG 159310 |||| |||| |||||||| | || |||||||| ||| | | |||||||| ||| || Sbjct 6139 TGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGG 6198 Query 159311 TATGGAAGTTAT 159322 |||||||||||| Sbjct 6199 TATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 158 bits (174), Expect = 1e-33 Identities = 202/277 (73%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 159096 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 159153 || || ||| |||||||||| ||| | ||||||||||||||||| || || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 159154 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCAT 159213 | ||||| |||||||| | || | |||||| || | || | || ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 159214 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 159273 ||||| | || ||| || |||||||| | | ||||| |||| |||| ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 159274 ACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTA 159333 | |||||| ||||| | | |||| ||| ||| |||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 159334 ACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 | || || |||||||| || ||||| ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 145 bits (160), Expect = 8e-30 Identities = 197/275 (72%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 160541 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 160600 |||||||| || | || ||| | | || || | ||||| |||||||| ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 160601 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160660 ||||||||||| ||||| | ||||| || |||| ||||| || || || ||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 160661 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGT 160720 || || ||||| ||||| || || | ||| | |||| | |||| | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 160721 CTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGAT 160780 | | | || || ||||| || || ||||| ||| || ||| | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 160781 CCAGAATTTGAGACCTTCTACACCAAGAACATCCT 160815 || |||||||||| ||||| ||||| || || || Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCT 2468 >seq1209 Length=37697 Score = 143 bits (158), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 ||||| | ||||| ||||| |||||||| | | ||||||| || || |||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 159096 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 159153 || || |||||||||||||| ||| | ||||||||||| | ||| || || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 159154 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCAT 159213 ||||| ||||||| || | |||||||||||||| | || | || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 159214 TCAACCTGAACGGTTTCAACTTCAAC 159239 ||||| |||| |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3485 Length=85743 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 159927 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 159986 |||| |||||||||||||| || ||||| || || | || |||| ||| ||| ||| Sbjct 21363 GGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTG 21422 Query 159987 CTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCG 160046 | | || |||||| |||| || ||||| || | ||| ||||||||||||||| | | Sbjct 21423 CCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGG 21482 Query 160047 CTAGTTCCTATCTTGAGGG 160065 | ||||||||| | || || Sbjct 21483 CAAGTTCCTATTTGGAAGG 21501 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 159294 AACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTC 159353 |||||||| ||| |||||||||||||||||||| ||||| || ||||||||||| || Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 159354 GACCTTGCTGCT 159365 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 >seq14341 Length=38040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 159099 CGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 || |||||||||||||| ||| | ||||||||||| ||||| || || |||||||| | Sbjct 2952 CGATTGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 2893 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTT 159184 |||| | |||||| || || |||||||| Sbjct 2892 CTGCTTCGCCTGTAGTAGGTATCTGGTT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552195650531840