Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq8682 178 2e-39 seq7398 152 6e-32 seq16876 131 2e-25 seq1209 125 9e-24 >seq8682 Length=13014 Score = 178 bits (196), Expect = 2e-39 Identities = 190/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 179554 ATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAAC 179613 ||||| || || ||||| || || || || |||||||||||||||||| || |||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 179614 TCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCT 179673 || || ||||| || |||||||| ||||| ||||| || || || || |||||||| ||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 179674 CTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTT 179733 | || | || ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 179734 GACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGT 179793 || ||||||| ||||| |||| || ||||| || | | |||||||| | | ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 179794 ATGGAAGTTAT 179804 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 152 bits (168), Expect = 6e-32 Identities = 206/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 180663 GCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACT 180722 ||||| || || | || ||| | |||| |||| || |||||||| || ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 180723 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCAT 180782 ||||||||||| ||||| | ||||| || |||| ||||| || || || ||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 180783 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGT 180842 || || ||||| ||||| || || | ||| |||||| || |||| | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 180843 CTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGAT 180902 | | | ||||| ||||| || || ||||| ||| || || | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 180903 CCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGG 180949 ||| | || ||||| ||||| ||||| || || || || || |||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGG 2480 >seq16876 Length=31318 Score = 131 bits (144), Expect = 2e-25 Identities = 196/277 (71%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 179578 GGTCGTTTGATCTTCCAATATGCA--TCCTTTAACAACTCACGCTCTTTGCACTTCTTCC 179635 || || ||| ||||||||||||| | || |||||||| || ||||| || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 179636 TTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGT 179695 | ||||| ||||| || | || | |||||| ||| | || | || ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 179696 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTA 179755 ||||| | || ||| || |||||||| | | |||| ||||||| | ||| || Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 179756 ACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTA 179815 | || ||| | || | | |||| ||| | | |||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 179816 ACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 179852 | || || |||||||| || ||||| ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 125 bits (138), Expect = 9e-24 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 179518 GGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 179577 ||||||| ||||| ||||| ||||| || | | | ||||| || || ||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 179578 GGTCGTTTGATCTTCCAATATGC--ATCCTTTAACAACTCACGCTCTTTGCACTTCTTCC 179635 || || ||||||||||||||||| || || |||||||| | ||||| || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 179636 TTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGT 179695 ||||| ||||| | || | ||||||||||| ||| | || | || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 179696 TCAACCTCAACGGTTTCAACTTCAAC 179721 ||||| | || |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610022543178240