Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq29839 268 1e-66 seq9269 113 6e-20 >seq29839 Length=13537 Score = 268 bits (296), Expect = 1e-66 Identities = 587/871 (67%), Gaps = 10/871 (1%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || |||||||| || | |||||| || |||||||| || || | ||| || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 39386 TCCATGAAATCAAACGGATTAGTTG--CATTATAtttttttttAAATCCTAATTCTGAAA 39443 ||||| ||||||||||||| ||| ||||||| |||| | |||| || || || Sbjct 5084 TCCATCCAATCAAACGGATT--TTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAA 5027 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 ||| |||||||| ||||||||||||||| |||||| || | ||||||||| | | Sbjct 5026 CCAACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAA 4967 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | || || | ||| || | ||| || |||| || || ||||||||||||| | Sbjct 4966 GAGCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAA 4907 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 || | ||| || |||||| | | | || | | ||| || || || | Sbjct 4906 TCTCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAA 4847 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | |||||||| || || ||||||| ||| || ||||| || || || | |||||||| Sbjct 4846 AATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCA 4787 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGATGCCT 39742 ||| ||||| ||||| | ||| || |||| |||| ||| || || ||||| || || Sbjct 4786 TTAACCCACGTTTTTTCAACCAGAAAATGG-AGCAGAAACTACCTGAGAAGAAAATTCCC 4728 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAAC--TTGTATCATTATGTATCCACT 39800 || || ||||| || | || | ||| || ||| || | ||| ||||||| Sbjct 4727 TCAACACAGGCAAACGCCAAAATACGCTCGGCG-AACGATTCCGT-GCTATCAATCCACT 4670 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 | ||||||||||| |||||||| ||||| || | ||||| |||||| || | Sbjct 4669 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACC 4610 Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 || || || | || ||| | ||| || || | | ||||| ||||| || |||| Sbjct 4609 GATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAAT 4550 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 ||||||| || || || || || ||||| || ||| ||| ||||||| || ||| || | Sbjct 4549 GGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTT 4490 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 || || | | | || | ||| || || || |||||| ||| || || || | Sbjct 4489 CTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGG 4430 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 | | ||||| | || |||| ||| || || | || || | ||||| | | Sbjct 4429 CAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAGGATTCCCAGTGGCGAAGGT 4370 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 ||| ||| | ||| ||||| || || ||||| || || || || || || |||||||| | Sbjct 4369 CTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCT 4310 Query 40161 TCCATATATCACGATATTGTATTGGAAAAAT 40191 ||| || | | |||| || ||||| || || Sbjct 4309 CCCAGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | |||| ||||| | ||| | || | |||||| || | ||| ||| Sbjct 7940 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCA 7881 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| ||||||||| || | || || ||||| || || Sbjct 7880 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCCATGGCACGGATATTGTGGATGGAA 7821 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || || || || || || | |||||| ||| || || |||||||| Sbjct 7820 ACACCAATACCACCAGCTGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATATT 7761 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || ||||| |||||||| ||||| | ||| ||||||||| Sbjct 7760 CCTTCTATACTATCATCCTTCATGCATACAAGGAAACAGCTA 7719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686563216182720