Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq29839 264 9e-66 >seq29839 Length=13537 Score = 264 bits (292), Expect = 9e-66 Identities = 590/873 (68%), Gaps = 17/873 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| |||| | | || ||| | |||||||| ||||| | || || || | Sbjct 4280 TGTTCCCAATTCATTATCCTCAAATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 4339 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGAC-TTAGCACATTGGATTGCATTAAAACCA 43825 |||| || || ||||| ||| | | ||||| || || | ||| | | |||| | Sbjct 4340 GGACTGCCGAGGAAGTCGATCTCTCACAAGACCTTCGCCACTGGGAATCC-TTAACTTCT 4398 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || |||||||| || || || | || || || ||||| || || || || Sbjct 4399 GACGAGAAACATTTCATCACTCATGTCCTTGCCTTCTTCGCTGCTTCTGATGGCATCGTT 4458 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || ||| | | | ||||| | ||||||| ||| | | ||||| || ||| Sbjct 4459 TTGGAGAATCTCGCCGGACGGTTCATGAAAGAAGTCCAAGTTGCTGAAGCTAGAGCTTTC 4518 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| || ||||||||||| || || || ||||| || |||||||||||||| | || Sbjct 4519 TATGGATTCCAAATTGCCATCGAGAACATCCATTCCGAGATGTACAGTCTTCTCCTTGAA 4578 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT-ACC 44064 || || |||||| || |||||||| |||| ||||| ||| || ||||| || || Sbjct 4579 ACCTATATCAAAAATTCAAACGAGAAGAATCGGTTGTTCCGTGCTATTGAAACTGTCCCC 4638 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 || | | || | || || || ||||| | || ||||| || | || || || | Sbjct 4639 TGTG-TCAAGAAGAAGGCTGATTGGGCGTTAAAGTGGATTGATAGCACGGAATCGTTCGC 4697 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG-G 44183 || || || | |||||||| ||| || || |||||||| ||||| | |||| | Sbjct 4698 CGAGCGTATTTTGGCGTTTGCCTGTGTTGAGGGAATTTTCTTCTCAGG-TAGTTTCTGCT 4756 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||| || ||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 4757 CCATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGATTAACGTTCTCAAACGAGTTGA 4816 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAG 44303 | || |||||||| | ||||| ||||||||||| ||||| | || | | | | Sbjct 4817 TTTCACGAGATGAAGGGCTTCATTGTGATTTTGCTTGTTTGTTGTATTCAT-TGTTGAGG 4875 Query 44304 ACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGA 44361 | || | || | | || | | | || ||||| |||||| || | ||||| Sbjct 4876 AAGAAA----TTGAGTGAGGATCGAGTGAGGGAGATTGTAACAGAGGCCGTTGATATAGA 4931 Query 44362 ACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGAT 44421 | |||||| || || || || || | | | |||||||||| ||||| Sbjct 4932 AAGGGAATTTGTGTGTGATGCTTTGCCGGTGGCTCTTGTTGGAATGAATGGGGACTTGAT 4991 Query 44422 GAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC--TGGGTTGCGATAAA 44479 || |||||| || |||| | |||||| | || ||||| | |||| | | ||| Sbjct 4992 GAGCCAATACATAGAATTTGTGGCAGATAGGTT--GGTTGGAGCCTTGGGATATGGCAAA 5049 Query 44480 CACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACA 44539 ||||| ||| ||||| |||||||||| ||||| ||||||||| | || || || Sbjct 5050 ATCTATAATGTTCAAAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACT 5109 Query 44540 AACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 || || ||||| ||| | || || ||||||||| Sbjct 5110 AATTTCTTTGAGAAAAGAGTCGGTGAATATCAG 5142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397261038889240