Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq21318 104 2e-17 seq18711 104 2e-17 seq22339 86.0 5e-12 >seq21318 Length=12341 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || ||||| || | |||||||| ||||| || || |||||||| || || || ||| Sbjct 4746 CCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGCT 4805 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || || ||||||| ||||| ||||| || |||| | | |||||| || || || Sbjct 4806 AGAGTCCTGC-CGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGG 4864 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| |||||| ||||| | || | || |||| | || || Sbjct 4865 AATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCAC 4924 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | || || | |||||| |||| ||||||||||| || |||||| Sbjct 4925 TTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCATA 4973 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || || | ||| | |||||||| | ||||| || || || ||||||||||| || Sbjct 4974 CCCCCACGAAGCCGAAGAACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCA 5033 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || |||| || ||||| ||||| || |||| || | ||||||||| || || Sbjct 5034 AGAGTT-CGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGG 5092 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || ||| || || | | || | || || | ||| || Sbjct 5093 GATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCAC 5152 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | |||||| || || || |||||||| |||||||| Sbjct 5153 CTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 5200 >seq18711 Length=80062 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| || || | |||||||||| || || |||||||| || || || ||| Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || |||||||| || || ||| |||| || | ||| || || || || Sbjct 40088 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGA 40029 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| || ||| || | | || | ||| || | |||||| Sbjct 40028 ATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 39969 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | |||||| || ||||||||||| ||||||||||| Sbjct 39968 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| || || || || || ||||| |||||||| || | || | ||||| Sbjct 40358 ACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCCATCTTCA 40299 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| ||| | || || | ||| || ||||| || | |||||||||||| | Sbjct 40298 AGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGGATACCCTCTTTATCTTGG 40239 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | || | || || | | ||| || |||| || || | ||| Sbjct 40238 ATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCACCTCTAAGGTGATGGTTTTA 40179 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||||||||| Sbjct 40178 CCGGTGAGGGTTTTCACGAAGATTTGCAT 40150 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || |||||||||||||||||| || ||| || | ||||||||||| || || Sbjct 40574 GTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTC-CGTCCATCTTCGAGCTGCTTGCC 40516 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || | | || || ||||| || | ||| ||||| || ||||| ||| Sbjct 40515 TGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATCTTAGCTTT 40456 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||||| | |||||| ||||| || |||| || ||||| || || Sbjct 40455 GACATTGTCGATTGTGTCTGAGCTTTCAACCTCTAGTGTAATAGTCTTCCCCGTAAGCGT 40396 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| ||||| |||||||| Sbjct 40395 TTTGACAAAAATTTGCAT 40378 >seq22339 Length=139203 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||||||| || | || | || ||||| || || ||| Sbjct 90796 GTTGATTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCG 90855 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||| || ||||| || || | || || || || ||||||| || Sbjct 90856 GCGAAAATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 90915 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | ||||| || || || || | ||||| || || ||| Sbjct 90916 ACGTTGTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTT 90975 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 90976 TTAACGAAGATTTGCAT 90992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424725960115776