Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq360 138 1e-27 seq30366 122 1e-22 seq23185 86.0 8e-12 >seq360 Length=27789 Score = 138 bits (152), Expect = 1e-27 Identities = 199/278 (72%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || ||||| |||||||||||||| | Sbjct 8696 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCACC 8755 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||| || | | || | ||||| |||||||||||||||||||| ||||| || Sbjct 8756 ACCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 8815 Query 11659 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || | ||| | ||| | || || | || || || ||| ||||||||||||| Sbjct 8816 AGGA-GCTTTGGACTTGGCTTTGTCGAACAAGTCCCGCACTCTTGAAGCACCCACACCAA 8874 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| || ||||| | || ||||| ||| || |||||| ||| | |||||| | Sbjct 8875 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCGG 8934 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | | ||| ||||| || || || ||||| ||||| ||| Sbjct 8935 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCAGGC 8972 >seq30366 Length=17364 Score = 122 bits (134), Expect = 1e-22 Identities = 283/424 (67%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | |||||||| ||||| || | ||| ||||| | ||||| Sbjct 11769 TCAAGAATGTCTGCCCTGTTAGTGGCAGCAATTACAATAATCCCAGTGTTTCCCTCAAAC 11710 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || |||| ||||||||||| || ||||| | | Sbjct 11709 CCATCCATTTCAGTTAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------A 11656 Query 11603 CCACCAG---CACTGCGT---TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||||| || ||| | || || || |||||||| ||||||| || ||||| Sbjct 11655 CCACCAATGCCAGTGCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATG 11596 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| |||||| ||| | | |||||||| ||||| | ||||| | |||| Sbjct 11595 CAAGGTGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAATACCA 11536 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCAC 11774 ||||||||||| ||||| | | | || | || || ||||||||| || ||||| Sbjct 11535 ACAAACATCTCAACAAACTCAGAACCTGA--AATGGAGAAAAATGGGACACCTGCTTCAC 11478 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGC 11834 | || ||||| ||| || | ||||| || || ||||| ||| | ||||| | | Sbjct 11477 CAGCAATGGCCTTGGCTAGCAAAGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACAC 11418 Query 11835 CTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 || || || || ||| || | ||||| || | ||||||||| ||||| | Sbjct 11417 CTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCAGGCTTCTTGAGAAACTCCACCA 11358 Query 11895 TCTC 11898 ||| Sbjct 11357 CCTC 11354 >seq23185 Length=144906 Score = 86.0 bits (94), Expect = 8e-12 Identities = 303/462 (66%), Gaps = 11/462 (2%) Strand=Plus/Minus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 |||| |||||||| ||||| || | | || || | ||| | ||||| | || Sbjct 4508 ATCTGTCGATCAAACCGACCAGGCCTCAACAGAGCTTTATCCAAAATATCAGGCCTGTTG 4449 Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAAT 11563 || | |||| || |||| |||| | | |||| |||||||| || || || Sbjct 4448 GTACCAGCAAGTACAACAACCCCAGAAGTAGTTCCAAACCCATCCATTTCAACCAGCAAC 4389 Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG--CATACCACCAGCACTGCGTTGCT 11621 ||||||| || ||| | ||||||||| || || | | || | | ||||| Sbjct 4388 TGATTAAGAGTACTTTCACGCTCATCATTCCCTCCACCAAAGCCCCCTCGGCCCCTTGCT 4329 Query 11622 TGCCCAC-CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 | ||| |||||| ||||||||||| || ||||||| ||| | || | || | Sbjct 4328 CGTCCAATCGCATCTATCTCATCAATAAATACAATACTTGGAGCACATTGTCTAGCTTCT 4269 Query 11681 TCAAAGAGATCGCGAACCCTT-TTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | ||| || | | ||||||| ||||| || || || |||||||| |||| ||| | || Sbjct 4268 TGAAACAGGTTTCTAACCCTTGTTGGC-CCAACCCCCACAAACATTTCCATAAAATCTGA 4210 Query 11740 GGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 |||| || ||| | ||| || |||| |||||||| || | ||| || || || Sbjct 4209 TCCAGA-CA-TGGACAGGAAAGGCACATCAGATTCACCTGCAGTTGCTTTTGCTAGAAGT 4152 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-ACT 11856 || || || ||||| || ||| |||| || || ||| ||| || || || || | Sbjct 4151 GTTTTCCCAGTACCAGGGGGACCAACGAGTAGAGCACCTTTGGGAATTTTTGCTCCTAAC 4092 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||| |||| ||| || | ||| || || | ||||| ||| Sbjct 4091 TCC-TCATATTTCTTTGGATTCTTAAGGAAGTGCACAAACTC 4051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627716037100800