Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq360 100 4e-16 seq29839 87.8 2e-12 >seq360 Length=27789 Score = 100 bits (110), Expect = 4e-16 Identities = 190/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| || Sbjct 8696 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCACC 8755 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | || | || || || ||||| ||||| ||||| || || || Sbjct 8756 ACCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 8815 Query 14272 TGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || | ||| || ||| || || | || |||||||| ||||| ||||| | Sbjct 8816 AGG-AGCTTTGGACTTGGCTTTGTCGAACAAGTCCCGCACTCTTGAAGCACCCACACCAA 8874 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| || ||||| | | ||| | ||| || ||| || || || |||||| | Sbjct 8875 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCGG 8934 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | | ||| ||||| || || || || || || || || Sbjct 8935 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCAGG 8971 >seq29839 Length=13537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| | || || || |||||||||||||| | || || || |||||||| Sbjct 4793 CCAGGCATTAACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAA 4734 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || ||||| ||||| || ||||| || | |||||| || || || | | ||||| Sbjct 4733 ATTCCCTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGA---TTCCGTGCTATCA 4677 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 | |||||| | |||||| | ||||| |||| || ||| ||||| || Sbjct 4676 ATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGT 4630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618124065250880