Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq360 138 1e-27 seq30366 131 2e-25 seq29839 93.3 5e-14 >seq360 Length=27789 Score = 138 bits (152), Expect = 1e-27 Identities = 278/408 (68%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || || |||||||| || | ||||||||| | Sbjct 8696 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCACC 8755 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | ||| || | | || | ||||| |||||||||||||||||||| || ||||| Sbjct 8756 ACCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 8815 Query 9733 TGGTTGATTTTCGCGAGCGACT-TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || | ||| | | | || || | ||||| ||| |||| || |||||||| Sbjct 8816 AGGA-GCTTTGGACTTGGCTTTGTCGAACAAGTCCCG--CACTCTTGAAGCACCCACACC 8872 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 |||||||| || ||||| | || ||| | ||| || ||| || ||| || |||||| Sbjct 8873 AACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACC 8932 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | ||| ||||| |||||||| || || ||||| ||| || | ||||| || Sbjct 8933 GGCCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCAGGCGGTCCTACAAGGAGACACCC 8992 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | ||| || || || ||| | ||| | ||||| | || | ||||| || | Sbjct 8993 TTTTGGGATTTTAGCTCCAAGAGCTGTGTACTTGTCAGGGTTTTTCAAGAAATCAACCAC 9052 Query 9970 TTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017 ||||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 9053 TTCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 9100 >seq30366 Length=17364 Score = 131 bits (144), Expect = 2e-25 Identities = 286/421 (68%), Gaps = 22/421 (5%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| || || | | || || || || || |||| ||| || |||||| | ||| Sbjct 11769 TCAAGAATGTCTGCCCTGTTAGTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CAA 11712 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | |||||||| || || | ||| ||||||| |||||||| ||||| |||||| | Sbjct 11711 ACCCATCCATTTCAGTTAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 11657 Query 9675 TACCACCAG---CACTGCGT---TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 ||||||| || ||| | || ||| || |||||||| ||||||| || || | Sbjct 11656 -ACCACCAATGCCAGTGCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAA 11598 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCAC 9786 |||| ||| |||||| || |||| |||||||| || || || || || | Sbjct 11597 TGCAAGGTGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACTCGAGAAGCACCAAT 11540 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 9845 ||||||||||||||| ||||| | | | ||| || | || || |||||| | || Sbjct 11539 ACCAACAAACATCTCAACAAACTCAGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTT 11481 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9905 |||| |||||||| ||| || | |||||| || || ||||| ||| | || || Sbjct 11480 CACCAGCAATGGCCTTGGCTAGCAAAGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAA 11421 Query 9906 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||||| ||||| || ||| || | | |||||||| | ||| ||||| |||| Sbjct 11420 CACCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCAGGCTTCTTGAGAAACTCCA 11361 Query 9966 C 9966 | Sbjct 11360 C 11360 >seq29839 Length=13537 Score = 93.3 bits (102), Expect = 5e-14 Identities = 392/607 (65%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTG--TGTTCCCCCTGAAGTATCCAC 94402 || |||||||| ||||||| | | | || ||| ||||||| | | ||||| | Sbjct 4243 GAGCCTCTCCTCGCCCCCAACCCCGATCGCTT--CTGCATGTTCCCAATTCATTATCCTC 4300 Query 94403 ACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGAAGAGGTAGA 94460 | ||||||| | || ||||| || || | | || ||||||| || || || || Sbjct 4301 AAATCTGGGAGATGTACAAGAAAGCCGAA--GCCTCCTTCTGGACTGCCGAGGAAGTCGA 4358 Query 94461 TCTCTCAAAGGAT-TTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAA 94519 ||||||| | || || | | | |||| || ||| | | || || | ||||| | Sbjct 4359 TCTCTCACAAGACCTTCGCCACTGGGAATCCT-TAACTTCTGACGAGAAACATTTCATCA 4417 Query 94520 AATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACA 94579 | |||| || ||||| |||| || ||||| || ||||| |||||| || | Sbjct 4418 CTCATGTCCTTGCCTTCTTCGCTGCTTCTGATGGCATCGTTTTGGAGAATCTCGCCGG-A 4476 Query 94580 ACTTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAG--TGTC 94636 || ||| || || ||| ||||||| ||| | ||||||| | || || | Sbjct 4477 CGGTTCATGAAAGAAGTCCAAGTTGCTGAAGCTAGAGCTTTCTATGGATTCCAAATTGCC 4536 Query 94637 ATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATG 94696 || ||| | ||| |||| |||||| ||| | || | ||||| || || Sbjct 4537 ATCGAGAACA--TCCATTCCGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAAAATT 4594 Query 94697 GTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAG 94756 |||||||| | | | || || || |||| || || ||| | | ||||| | Sbjct 4595 CAAACGAGAAGAATCGGTTGTTCCGTGCTATTGAAACTGTCCCCTGTGTCAAGAAGAAGG 4654 Query 94757 CGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCG 94816 | |||||||| | |||||| |||||| | || || || || ||||| | || | Sbjct 4655 CTGATTGGGCGTTAAAGTGGATTGATAGCA---CGGAATCGTTCGCCGAGCGTATTTTGG 4711 Query 94817 CATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCA 94876 | ||||| ||||||||||| || |||||||| ||| |||||| | |||| ||| | | Sbjct 4712 CGTTTGCCTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCCATTTTCTGGTTGA 4771 Query 94877 AGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 | || || || | ||||| || | ||||| |||||| | || || || || || | Sbjct 4772 AAAAACGTGGGTTAATGCCTGGATTAACGTTCTCAAACGAGTTGATTTCACGAGATGAAG 4831 Query 94937 GACTCCA 94943 | || || Sbjct 4832 GGCTTCA 4838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582967361491520