Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq29839 114 1e-20 >seq29839 Length=13537 Score = 114 bits (126), Expect = 1e-20 Identities = 357/543 (66%), Gaps = 10/543 (2%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| | | |||||| | || ||| | ||||| Sbjct 4313 TGTACAAGAAAGCCGAAGCCTCCTTCTGGACTGCCGAGGAAGTCGATCTCTCACAAGACC 4372 Query 59653 TGAAGGATTGGGACAAGCTCAATTAC-GACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 | | ||||| | || || | | |||||| | |||||||||| ||||| ||| Sbjct 4373 TTCGCCACTGGGA-ATCCTTAACTTCTGACGAGAAACATTTCATCACTCATGTCCTTGCC 4431 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTC--CAAGG 59769 |||||||| || |||||| || || |||| ||| | | | | || ||| || | Sbjct 4432 TTCTTCGCTGCTTCTGATGGCATCGTTTTGGAGAATCTCGCC--GGACGGTTCATGAAAG 4489 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCC 59829 | ||||| |||| || || | | ||||| | | || || |||| |||| Sbjct 4490 AAGTCCAAGTTGCTGAAGCTAGAGCTTTCTATGGATTCCAAATTGCCATCGAGAACATCC 4549 Query 59830 ACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTG 59889 | ||||||| |||| || | | || | | |||| || | | |||||| | Sbjct 4550 ATTCCGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAAAATTCAAACGAGAAGAATC 4609 Query 59890 GTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 | |||||||||| || || || |||||| | || || | || || || ||||| | Sbjct 4610 GGTTGTTCCGTGCTATTGAAACTGTCCCCTG-TGTCAAGAAGAAGGCTGATTGGGCGTTA 4668 Query 59949 CAGTGGA-TGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGA 60007 |||||| ||| | | | ||| || || | ||| | | || ||||| || || || Sbjct 4669 AAGTGGATTGATAGCACG-GAATCGTTCGCCGAGCGTATTTTGGCGTTTGCCTGTGTTGA 4727 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 ||||| |||||||| || ||||| | ||||||||| | ||||| ||||| | || Sbjct 4728 GGGAATTTTCTTCTCAGGTAGTTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGGTTAAT 4787 Query 60068 GCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTT 60127 ||| || | | ||||| |||||| ||||||| || || || || || ||| || || Sbjct 4788 GCCTGGATTAACGTTCTCAAACGAGTTGATTTCACGAGATGAAGGGCTTCATTGTGATTT 4847 Query 60128 TGC 60130 ||| Sbjct 4848 TGC 4850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548248837173120