Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq8682 147 3e-30 seq16876 123 3e-23 seq3977 102 1e-16 >seq8682 Length=13014 Score = 147 bits (162), Expect = 3e-30 Identities = 183/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| || ||||| ||||| || | |||||||| ||||| |||||| ||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||||| || || | || || || | || ||||| || || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| ||||| |||||||||| || |||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 177046 ATGGAAGTTAT 177056 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 123 bits (136), Expect = 3e-23 Identities = 186/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 176840 TCTTCCAGTATGCT--TCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATT 176897 ||||||| |||||| | |||||| ||||| | | | || || ||||| || || | Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 176898 CCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAA 176957 || || | | | ||| || || | ||| || |||| ||||| |||||| | || Sbjct 28118 GCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 176958 CGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGG 177017 ||| || |||||||| | ||| | || | ||| | || |||| ||| ||| Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233 Query 177018 AGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 177077 |||||| |||||| ||| || ||||||| |||||||||||| || |||||||| || || Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293 Query 177078 CTTCCCACTTGACCTTGCTGCTG 177100 |||||| || ||||| ||| ||| Sbjct 28294 CTTCCCTCTAGACCTAGCTACTG 28316 >seq3977 Length=13071 Score = 102 bits (112), Expect = 1e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 177019 GATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 ||||| | |||||||| || |||||||||||||||||||| || ||||||||||||||| Sbjct 6 GATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 65 Query 177079 TTCCCACTTGACCTTGCTGCT 177099 ||||| || ||||| |||||| Sbjct 66 TTCCCTCTAGACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603190781967360