Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq26478 96.9 3e-15 seq3045 96.9 3e-15 seq18711 89.7 4e-13 >seq26478 Length=75715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| || | || | ||| | || |||||| || || || ||||| || ||||| Sbjct 13966 GCCTCCCCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGC 13907 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| ||||| |||| |||||||| || || || || || | |||||||||||||| ||| Sbjct 13906 AAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGG 13847 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| || |||| | | | |||||| ||| || Sbjct 13846 GATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTCTCGAC 13787 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || | || ||||| || ||||| || ||||| ||||| Sbjct 13786 TTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 13739 >seq3045 Length=115554 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| || |||||||| ||||| |||| ||||| || || || || || Sbjct 11760 TCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 11819 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||| |||||||||| ||| | | || |||||| ||| || ||| | ||| Sbjct 11820 ATGAGACGTTGCTGGTCGGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTTA-CGTT 11878 Query 39214 GCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | || | | ||| |||||||| || | ||||| | || || || || ||||| || Sbjct 11879 GTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATTGTCTTCCCGGTAAGGGTTTTGAC 11938 Query 39273 AAAGATTTGCAT 39284 ||||||||||| Sbjct 11939 GAAGATTTGCAT 11950 >seq18711 Length=80062 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || | ||| || | |||||||||||| || ||||||||||| ||||||||||| Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || ||||| || || || || ||||| | ||||||||| | || Sbjct 40088 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGA 40029 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| ||| ||||| || | | | | ||||| || || Sbjct 40028 ATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 39969 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || |||| || || || ||||| || ||||||||||||| Sbjct 39968 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCATCT 39920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429334898218424