Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq21318 113 3e-20 seq3045 107 1e-18 seq22339 104 2e-17 seq18711 100 2e-16 seq31175 86.0 4e-12 >seq21318 Length=12341 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | ||||| || || |||||||| ||||| || | | Sbjct 4517 AATGCAGATTTTCGTGAAGACATTGACGGGCAAGACCATCACTCTGGAAGTAGAAAGCTC 4458 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || |||| | || ||||| || || | || || || | Sbjct 4457 CGACACTATCGACAATGTGAAGGCAAAGA-TTCAAGACAAGGAGGGAATCCCACCTGACC 4399 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| ||||||||||| ||||| | | ||||||| ||||||| Sbjct 4398 AGCAGAGGCTGATCTTTGCAGGCAAACAACTTGAAGATGGCAGAACTTTAGCTGATTACA 4339 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| ||||| || || || | ||||| || Sbjct 4338 ACATCCAAAAGGAATCAACTCTCCATTTGGT 4308 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | ||||| || || ||||| | ||||| || | Sbjct 4745 AATGCAGATTTTCGTGAAGACATTAACGGGGAAGACAATCACATTGGAAGTCGAAAGTTC 4686 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || | | |||||||| ||| | || || || | Sbjct 4685 AGACACCATTGACAATGTGAAAGCCAAGA-TCCAAGACAAAGAGGGTATCCCACCTGACC 4627 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | || |||||||| || || ||||||||||||| | ||||||| || |||| Sbjct 4626 AACAGAGATTGATATTTGCTGGTAAGCAACTGGAAGACGGTAGGACTTTAGCAGACTACA 4567 Query 23789 ACATACAAAAAGAGTCCACATTACA 23813 |||| || || || || ||||| || Sbjct 4566 ACATCCAGAAGGAATCAACATTGCA 4542 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| || ||||| | |||||||| | | Sbjct 4288 ATGCAGATTTTCGTGAAGACGCTGACAGGAAAGACAATCACATTGGAAGTTGAAAGCTCA 4229 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | || |||||||| Sbjct 4228 GACACAATCGACAATGTGAAGGCGAAGA-TTCAAGACAAGGAGGGGATTCCACCAGATCA 4170 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || |||||| |||| || | || ||||| | || ||||| Sbjct 4169 ACAGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCGGACTTTGGCTGACTACAA 4110 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 4109 TATTCAGAAAGAGTCCAC 4092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||| | || || ||||| ||||| | ||||| || | | Sbjct 4972 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAAACAATCACCTTGGAAGTGGAGAGCTCA 4913 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | || || || || || || | || || || || Sbjct 4912 GATACAATTGATAATGTGAAAGC-TAAGATCCAAGATAAGGAGGGCATTCCACCTGACCA 4854 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || || || || ||||||| | ||| ||| ||||| || Sbjct 4853 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGACGGCAGGACTCTAGCAGATTATAA 4794 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| || || || || ||||| || | | ||||| || ||| Sbjct 4793 CATTCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATTGCGTGGTGGA 4745 >seq3045 Length=115554 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| ||||| ||||| || ||||| | || ||||| || | Sbjct 11494 ATGCAAATTTTTGTGAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 11435 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| |||||| | || ||||| ||| Sbjct 11434 GACACAATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 11375 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||| ||||||| | || ||| | | ||||||||| Sbjct 11374 CAGAGACTCATCTTTGCTGGGAAACAATTGGAAGATGGCCGAACTCTTGCAGATTACAAC 11315 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 11314 ATCCAGAAGGAGTCTAC 11298 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||||||||| || || || ||||| ||||| || || ||| | Sbjct 12178 ATGCAAATCTTCGTTAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTGGAGTCCTCT 12119 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || || || || ||||| | || || ||||| Sbjct 12118 GACACCATCGACAACGTTAAGGC-CAAGATCCAGGATAAGGAAGGAATCCCCCCGGATCA 12060 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || || |||||||| ||||| || || | || ||| | | ||| ||||| Sbjct 12059 GCAACGTTTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCCGACTACAA 12000 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 11999 CATCCAGAAAGAATCAAC 11982 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || ||||| || ||||| || || || || || | Sbjct 11722 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAGGTGGAGTCGTCC 11663 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || || || |||||| | || ||||| || Sbjct 11662 GACACTATTGATAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGACCAG 11603 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || ||||||||||| || || ||||||| | || || | | |||||||||| Sbjct 11602 CAGAGATTGATATTTGCCGGAAAGCAGTTGGAAGATGGGCGAACCCTTGCCGATTACAAC 11543 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 11542 ATTCAGAAGGAATCCAC 11526 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| ||||| ||||| || || |||||| | || || || | Sbjct 11039 AATGCAGATCTTTGTTAAGACCCTGACGGGGAAGACCATCACTTTGGAGGTGGAGAGTTC 10980 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || |||||| || ||||| || || | || || || | Sbjct 10979 TGATACAATCGACAATGTGAAGGCAAAAA-TTCAGGACAAGGAGGGAATTCCTCCGGACC 10921 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || ||||| ||||| | | | || | | ||||||| Sbjct 10920 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTAGAAGATGGAAGGACCCTTGCTGATTACA 10861 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 10860 ACATTCAGAAGGAGTCTAC 10842 >seq22339 Length=139203 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||||| || || ||||| ||||| ||||| ||||| ||| | Sbjct 90536 ATGCAGATTTTCGTTAAGACCCTGACCGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 90477 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || ||| || ||||| ||||| | || ||||| ||| Sbjct 90476 GATACCATCGATAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAA 90417 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || ||||| || ||| | ||||||| || || | | ||||||||| Sbjct 90416 CAAAGACTCATCTTCGCCGGGAAGCAATTAGAAGACGGTCGTACCCTTGCTGATTACAAC 90357 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 90356 ATCCAGAAGGAGTCGAC 90340 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || || || || ||||| || || || || || | Sbjct 90764 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCT 90705 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| || || ||||||||||| | || |||||||| Sbjct 90704 GATACCATCGACAACGTAAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 90645 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || ||||| || || | || || || | ||| |||||| Sbjct 90644 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTACAAC 90585 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 90584 ATCCAAAAGGAGTCTAC 90568 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||||| || || || || ||||| || || ||||| || | Sbjct 90992 ATGCAAATCTTCGTTAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 90933 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || ||||| ||||| | || |||||||| Sbjct 90932 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 90873 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || ||||| || || | || || || | ||| |||||| Sbjct 90872 CAACGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTACAAC 90813 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 90812 ATCCAAAAGGAATCAAC 90796 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||| | || ||||| || ||||| | || || || | | Sbjct 90080 ATGCAGATCTTCGTGAAAACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCT 90021 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| |||||| ||||| ||||| | || || || || Sbjct 90020 GACACGATCGATAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATCCCTCCGGACCAG 89961 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || || || ||||| || | | | ||| | | ||||||||| Sbjct 89960 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAGGATGGAAGGACTCTCGCTGATTACAAC 89901 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 89900 ATTCAGAAGGAGTCCAC 89884 >seq18711 Length=80062 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| || ||||| || || || || || || ||||| | | Sbjct 40377 AATGCAAATTTTTGTCAAAACGCTTACGGGGAAGACTATTACACTAGAGGTTGAAAGCTC 40436 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | || | || |||||||||||| | || || || | Sbjct 40437 AGACACAATCGACAATGTCAAAGCTAAGA-TTCAAGACAAAGAAGGTATTCCCCCGGACC 40495 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || || || ||||| || || ||||| | ||| || ||| ||| |||| Sbjct 40496 AGCAAAGGTTGATCTTCGCAGGCAAGCAGCTCGAAGATGGACGGACACTAGCCGACTACA 40555 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || ||||| |||||||| Sbjct 40556 ATATTCAAAAGGAGTCCAC 40574 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||||||||| || ||||| ||||| | || || || | | Sbjct 40149 AATGCAAATCTTCGTGAAAACCCTCACCGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 40208 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || | || || || ||||| ||| | || || || | Sbjct 40209 CGATACCATCGATAATGTGAAGGC-TAAGATCCAAGATAAAGAGGGTATCCCCCCGGACC 40267 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | |||| || || || |||||||| ||||| | || ||||| | || |||| Sbjct 40268 AGCAGAGACTAATCTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACA 40327 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| || || || || ||||| |||||||| Sbjct 40328 ACATTCAGAAGGAATCAACATTGCATTTAGT 40358 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| ||||| || ||||| || || || || ||||| | Sbjct 39922 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTTGAAAGTTCT 39981 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | |||| |||||| || |||||||| | || ||||| || Sbjct 39982 GATACTATTGACAATGTAAAGGCCAAAATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 40041 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || || || || || || | || || | | |||||| ||| Sbjct 40042 CAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 40101 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||||||| || || ||||||| || Sbjct 40102 ATACAAAAAGAATCAACCCTACATTTGGT 40130 >seq31175 Length=13598 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || |||||||||||||| || || || || ||||| || || ||||| || Sbjct 7670 AAGATGCAAATCTTCGTTAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAGTCG 7611 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | || | | || || || ||||| ||||| | || |||||| Sbjct 7610 TCTGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGAT 7551 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | | || || ||||| || ||||| || || | || || || | ||| ||| Sbjct 7550 CAGCAACTTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTAC 7491 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| || || || Sbjct 7490 AACATCCAAAAGGAATCAAC 7471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337843798685984