Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq21318 104 2e-17 seq3045 82.4 6e-11 >seq21318 Length=12341 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || |||| || | ||||| || | ||||||||| ||||| || |||||||| || Sbjct 4290 CCCCCACGCAGTCGAAGCACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCT 4349 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| || |||||| | ||||||||| ||| | || ||||| || ||||| || Sbjct 4350 AAAGTTCTGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4409 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | || || ||||| ||| ||| ||||||| | | | || || | | | || | Sbjct 4410 ATTCCCTCCTTGTCTTGAATCTTTGCCTTCACATTGTCGATAGTGTCGGAG--CTTTCTA 4467 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | || || || |||||||||||||| || | ||||| |||||| Sbjct 4468 CTTCCAGAGTGATGGTCTTGCCCGTCAATGTCTTCACGAAAATCTGCATT 4517 >seq3045 Length=115554 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 ||| || || || || || |||||||| || | |||| | ||||||||||||||| || Sbjct 11297 AGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATCTTCCAATTGTTTCCC 11356 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTT 101160 ||| | || || || ||||||||| ||| | ||||| ||||| ||| || || Sbjct 11357 AGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTT 11416 Query 101161 CACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 ||| | | | | || |||| ||| || | ||| || || || || || | || Sbjct 11417 CACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGT 11476 Query 101221 TTTAATAAAAATTTGCAT 101238 ||| | |||||||||||| Sbjct 11477 TTTCACAAAAATTTGCAT 11494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409459852160232