Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq29839 201 1e-46 >seq29839 Length=13537 Score = 201 bits (222), Expect = 1e-46 Identities = 563/854 (66%), Gaps = 15/854 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| || || ||||||||||| || || | |||||||| ||||| |||||||| Sbjct 5129 ACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAACTCCATCCAATCAAAC 5070 Query 4332 GGATTAGTTG--CGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTA 4389 ||||| ||| | || || ||| || | | ||| ||| ||| | || || | Sbjct 5069 GGATT--TTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACCAACCTATCTGCCA 5012 Query 4390 CAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449 |||||||||| || |||||||| | || | || ||||||| | ||| || | | Sbjct 5011 CAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGAGCCACCGGCAAAG 4952 Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 | | || ||| || ||||||| ||||| ||||| | || || | | | || Sbjct 4951 CATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATCTCCCTCACTCGAT 4892 Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAAC 4569 | | | ||| || || || | |||| ||||| |||||||||||||| | | Sbjct 4891 CCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAATCACAATGAAGCC 4832 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||| ||||| ||||| || ||||||||||| |||||||| || | |||| Sbjct 4831 CTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATTAACCCACGTTTTT 4772 Query 4630 TAAGCC--AAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 | | || ||||| ||| | || | || || ||||| || || || || |||||| Sbjct 4771 TCAACCAGAAAATGGAGCAGAAACT--ACCTGAGAAGAAAATTCCCTCAACACAGGCAAA 4714 Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 ||| | | || ||||||| | || | |||||| ||||| ||||| | Sbjct 4713 CGCCAAAATACGCTCGGCGAACGA---TTCCGTGCTATCAATCCACTTTAACGCCCAATC 4657 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807 ||| || ||||| || || || | || | ||||| || || | | || || Sbjct 4656 AGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACCGATTCTTCTCGTT 4597 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 || | || ||||| || || | || || || ||||| || ||||| || || || || Sbjct 4596 TGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAATGGATGTTCTCGAT 4537 Query 4868 AGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || ||||| || ||||| ||||||||| | ||||| ||||| || || | Sbjct 4536 GGCAATTTGGAATCCATAGAAAGC-TCTAGCTTCAGCAACTTGGACTTCTTTCATGAACC 4478 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 | | | | || || || || || ||| || || || || || | ||||||| Sbjct 4477 GTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGGCAAGGACATGAG 4418 Query 4987 ATATAAAGTACTGTTCGTCAG-GCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || || | | ||||||| ||||| || ||||||| | | |||| | | | Sbjct 4417 TGATGAAATGTTTCTCGTCAGAAGTTAAG-GATTCCCAGTGGCGAAGGTCTTGTGAGAGA 4359 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 || ||||| || ||||||| || || ||||| ||||| |||||||| ||| || | | Sbjct 4358 TCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGATTTGA 4299 Query 5106 GGATACTGAATCGG 5119 ||||| ||||| || Sbjct 4298 GGATAATGAATTGG 4285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426840122562584