Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq29839 235 8e-57 seq9269 114 2e-20 >seq29839 Length=13537 Score = 235 bits (260), Expect = 8e-57 Identities = 575/868 (66%), Gaps = 4/868 (0%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || ||||||||||| || | |||||| || |||||||| || || | ||| || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| ||||||| ||||| ||||||| ||||| | |||| || || || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | |||||||| || |||||||| ||| |||||| || | ||||||||| | ||| Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || || | ||| || | ||| || ||| ||| || || || || ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | || |||||||| | | | ||| | | ||| ||||| |||||| Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 4845 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 ||||||||||| |||||||||| ||| || ||||| || || || | || |||||| Sbjct 4844 TCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATT 4785 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 | ||||||||||| | ||| || || | |||| || || ||||| || || || Sbjct 4784 AACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAAATTCCCTCA 4725 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT--TGTGTATCCACCGTT 48327 || ||||| || || | ||| || ||| | | ||| | | |||||| | Sbjct 4724 ACACAGGCAAACGCCAAAATACGCTCGGCG-AAC-GATTCCGTGCTATCAATCCACTTTA 4667 Query 48328 GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 48387 |||||||||||||||||||| ||||| || | ||||| |||||| || | | Sbjct 4666 ACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACCGAT 4607 Query 48388 ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 | || || || || ||| | || || || | | |||||| ||||| ||||| || | Sbjct 4606 TCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAATGGA 4547 Query 48448 TATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCG 48507 | || || || || || || ||||| || ||| ||| ||||| | | || || || Sbjct 4546 TGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTTCTT 4487 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 | || ||| | || | |||||| || || |||||| |||||| || || || | Sbjct 4486 TCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGGCAA 4427 Query 48568 ATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTT 48627 ||||| | || |||| ||| |||| ||||| | | ||||| | |||| Sbjct 4426 GGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAGGATTCCCAGTGGCGAAGGTCTT 4367 Query 48628 TTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCC 48687 ||| | ||| ||||| || || ||||| || || || || ||||| || ||||| | || Sbjct 4366 GTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCC 4307 Query 48688 ATATATCACTGTATTGGATTGGGAAAAT 48715 | || | | || || |||||||| || Sbjct 4306 AGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||||| || || | ||| |||| | || ||| || | ||| || Sbjct 7941 ACCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCC 7882 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 |||||||| |||||||||||| ||||||||| || | || || ||||| ||||| Sbjct 7881 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCCATGGCACGGATATTGTGGATGGA 7822 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || || || || ||| || | ||| || ||| || ||||| || || Sbjct 7821 AACACCAATACCACCAGCTGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATAT 7762 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || |||||||| |||||| ||||| | ||| ||||||||| Sbjct 7761 TCCTTCTATACTATCATCCTTCATGCATACAAGGAAACAGCTA 7719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694319312126720