Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq29839 271 1e-67 seq9269 122 1e-22 >seq29839 Length=13537 Score = 271 bits (300), Expect = 1e-67 Identities = 583/868 (67%), Gaps = 4/868 (0%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || |||||||| || | |||||| || |||||||| || || | ||| || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||||||||| ||||||||| ||||| | |||| || || || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | |||||||| || |||||||| || |||||| || | ||||||||| | || Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||||| | ||| || | ||| || ||| ||| || || || | || ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | ||| |||||||| | | | |||| | | ||| ||||| |||||| Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 4845 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||||||||| |||||||||| ||| || ||||| || || || | ||||||||| Sbjct 4844 TCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATT 4785 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | ||||| ||||| | ||| || || | |||| || || ||||| || || || Sbjct 4784 AACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAAATTCCCTCA 4725 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC--TGGCATCATTATGAATCCACCTTT 46816 ||| || || || | || | ||| || ||| | | | ||| ||||||| || Sbjct 4724 ACACAGGCAAACGCCAAAATACGCTCGGCG-AACGATTCCGT-GCTATCAATCCACTTTA 4667 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 |||||||||||||| ||||| ||||| || | ||||| |||||| || | | Sbjct 4666 ACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACCGAT 4607 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 | || || | || ||| | ||| || || | | |||||| ||||| || ||||| | Sbjct 4606 TCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAATGGA 4547 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 |||| || || || || || ||||| || ||| ||| ||||||| || || || ||| Sbjct 4546 TGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTTCTT 4487 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | || ||| | | | |||||| || || |||||| |||||| || || || | Sbjct 4486 TCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGGCAA 4427 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTT 47116 ||||| | || |||| ||| || || | ||| | | ||||| | |||| Sbjct 4426 GGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAGGATTCCCAGTGGCGAAGGTCTT 4367 Query 47117 TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCC 47176 ||| | ||| ||||| || || |||||||| || || || ||||| || ||||| | || Sbjct 4366 GTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCC 4307 Query 47177 ATATATCACGATATTGGATCGGAAAAAT 47204 | || | | |||| || || || || || Sbjct 4306 AGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 122 bits (134), Expect = 1e-22 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||||| ||||| | ||| |||| | || ||| || | ||| || Sbjct 7941 ACCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCC 7882 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT-GCACGAATATTACTAATAG 76871 |||||||| |||||||||||| ||||||||| || ||| ||||| ||||| || | Sbjct 7881 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCC-CATGGCACGGATATTGTGGATGG 7823 Query 76872 ATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 | | || || || || || || || | |||||| ||| || || ||||| | Sbjct 7822 AAACACCAATACCACCAGCTGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATA 7763 Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 | || ||||||||||||||| ||||| | ||| ||||||||| Sbjct 7762 TTCCTTCTATACTATCATCCTTCATGCATACAAGGAAACAGCTA 7719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712575722703360