Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq8682 214 2e-50 seq16876 179 5e-40 seq7398 159 4e-34 seq1209 152 6e-32 seq33924 96.9 4e-15 seq3977 95.1 2e-14 seq22494 91.5 2e-13 seq3976 91.5 2e-13 >seq8682 Length=13014 Score = 214 bits (236), Expect = 2e-50 Identities = 198/251 (79%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 183889 ATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAAT 183948 || || ||||||||||| || ||||| || |||||||||| ||||| || ||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 183949 TCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCT 184008 ||||||||| | || |||||||| ||||||||||| || || || || ||||| || ||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 184009 CTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATT 184068 | ||| ||||||||||||| || ||| | |||||||| || |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 184069 GATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGC 184128 ||| ||||||||||||| | || |||||||| || || | ||||||||| |||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 184129 ATGGAAGTGAT 184139 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 179 bits (198), Expect = 5e-40 Identities = 209/279 (75%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 183911 TTGGTCGTCTGATCTTCCAGTATGCTTC-GTTT-AACAATTCTCGTTCTCTTCACTTCTT 183968 |||| || || ||||||| |||||| |||| ||||| || |||||| | || || || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 183969 CCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGC 184028 ||| ||||||||||| || | || | ||| || ||| | ||| ||||||||||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 184029 ATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCT 184088 || ||| | ||| ||| || |||||||| | | ||||| ||||||||| ||| | Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAAT 28221 Query 184089 GAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCG 184148 | |||||| |||| || | |||| |||| |||||| | |||||| ||||| || || Sbjct 28222 TCATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACG 28281 Query 184149 TAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 |||||| || ||||||||||| ||||| ||| ||| ||| Sbjct 28282 TAATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 159 bits (176), Expect = 4e-34 Identities = 208/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 186603 GCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACT 186662 ||||| |||||| | || || | | || |||| |||||||| ||||| ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 186663 GCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCAT 186722 || ||| | || ||||| | ||||| || |||| ||| |||||| |||||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 186723 TTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGT 186782 ||||| ||| | ||||| || || | ||| | |||| | | |||| | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 186783 CTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGAT 186842 | | ||||||| ||||| |||||||| || |||||| | | | ||| || ||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 186843 CCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGT 186890 ||| | || ||||| ||||||||||| ||||| || || || ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq1209 Length=37697 Score = 152 bits (168), Expect = 6e-32 Identities = 159/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||| | ||||||||||| ||||| || | | || || ||||||||||| || ||| Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTC-GTTT-AACAATTCTCGTTCTCTTCACTTCTTCC 183970 || || |||||||||| |||||| |||| ||||| |||| |||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 183971 TTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCAT 184030 ||||||||||| | || | |||||||| || ||| | ||| ||||||||||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 184031 TTAACCTGAATGGTTTTAACTTCAAC 184056 | ||| ||||||||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq33924 Length=56609 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| ||| || ||||||||||| ||||||||||||||| |||| || ||||| | Sbjct 50075 CTGATGATACTTACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTT 50016 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | | || || || ||||| || || || |||||||| | ||||| |||||||| | Sbjct 50015 GCAGGGCAGGCGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGT 49956 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCT 171168 | || || |||||||||||| ||| || | | |||| | | |||||||| | Sbjct 49955 CGGACGGGTCGTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTT 49896 Query 171169 CAT 171171 ||| Sbjct 49895 CAT 49893 >seq3977 Length=13071 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 184111 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTC 184170 ||||||||| |||||| |||||||| ||||| || ||||||||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 184171 GACCTTGCTGCT 184182 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 >seq22494 Length=12707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 183943 AACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTT 184002 ||| ||| ||||||| | || |||||||| ||||||||||| || || || |||||||| Sbjct 7464 AACTATTTTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 7523 Query 184003 ACTGCTCTTGGTGTTAGCACTATGGCATTTAAC 184035 || ||| | ||| ||||||||||||| || ||| Sbjct 7524 ACCGCTTTAGGTATTAGCACTATGGCTTTCAAC 7556 >seq3976 Length=23881 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 183943 AACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTT 184002 ||| ||| ||||||| | || |||||||| |||||||||| || | || |||||||| Sbjct 23769 AACTATTTTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCTTGTAATAGGTATCTGGTTC 23828 Query 184003 ACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAA 184055 || ||| | ||| ||||||||||||| || || | ||||||| || ||||| Sbjct 23829 ACCGCTTTAGGTATTAGCACTATGGCTTTCAAATTAAATGGTTGAAATTTCAA 23881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621757436381760