Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq8682 192 7e-44 seq16876 161 1e-34 seq7398 158 1e-33 seq1209 134 2e-26 seq3977 89.7 6e-13 seq3485 89.7 6e-13 >seq8682 Length=13014 Score = 192 bits (212), Expect = 7e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 164621 ATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAAC 164680 ||||| || ||||| ||||| ||||| || |||| |||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 164681 TCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCT 164740 || ||||| | || |||||||| || || |||||||| || ||||| ||||| || ||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 164741 CTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATC 164800 | || ||||||| ||||| |||||| | || |||||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 164801 GATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGC 164860 ||| |||| |||||||| | || |||||||| || || | ||||||||| ||| || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 164861 ATGGAAGTGAT 164871 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 161 bits (178), Expect = 1e-34 Identities = 204/279 (73%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 164643 TTGGTCGTCTGATTTTCCAATACGCT--TCCTTCAACAACTCCCGTTCGCTGCACTTCTT 164700 |||| || || | |||||||| ||| | ||||||||||||||||| | || || || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 164701 CCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGC 164760 ||| || || |||||||| | |||| ||| || ||| | || ||||||| ||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 164761 ATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCT 164820 |||||| | || ||| || |||||||| | | | ||| |||| |||| ||| | Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAAT 28221 Query 164821 CAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCG 164880 | |||||| |||| || | |||| |||| ||| || | |||||| ||||| || || Sbjct 28222 TCATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACG 28281 Query 164881 TAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 |||||| || ||||||||||| ||||| ||| ||| ||| Sbjct 28282 TAATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 158 bits (174), Expect = 1e-33 Identities = 207/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 165795 GCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACT 165854 ||||| || ||| | || ||| | ||||| | || ||||||||||| ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 165855 GCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCAC 165914 || ||||| || ||||| | || ||||| ||||||| |||||| |||||| | || Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 165915 TTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGT 165974 ||||||||| | ||||| || || | || | |||| ||| || |||| | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 165975 CTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGAT 166034 | | | || || ||||| ||||| || || |||||||| ||| | | || || ||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 166035 CCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGG 166081 || | ||||| || |||||||| ||||| || ||| | || |||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGG 2480 >seq1209 Length=37697 Score = 134 bits (148), Expect = 2e-26 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 164555 GAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACC 164614 || |||| |||||||| || || | ||||| | || ||||| || |||||||| Sbjct 32472 GAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAAGAAACT 32531 Query 164615 TACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCT--TCCT 164672 | | ||||| || ||||| ||||| ||||| || |||| |||||||| ||| | | Sbjct 32532 TCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTT 32591 Query 164673 TCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 164732 |||||||||| | ||| | || ||||||| || || ||||||| || ||||||||| Sbjct 32592 TCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGT 32651 Query 164733 TTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 164788 | || ||| | || ||||||| ||| | |||||| | || |||| || |||||| Sbjct 32652 TCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 164843 AACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTC 164902 ||||||||| ||| || |||||||| ||||| || ||||||||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 164903 GACCTTGCTGCT 164914 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 >seq3485 Length=85743 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 165153 TTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 165212 |||||| | | || |||||| | || ||||||||||||||||| || ||||| || Sbjct 21335 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 21394 Query 165213 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 165272 || | || ||||| ||| ||| |||| | || |||||| |||| || || || || Sbjct 21395 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 21454 Query 165273 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG 165319 || || |||||||| || ||| | || ||||||||| | || || Sbjct 21455 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGG 21501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557373844071360