Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq8682 210 3e-49 seq16876 174 2e-38 seq7398 152 6e-32 seq1209 152 6e-32 seq3977 100 3e-16 seq22494 84.2 3e-11 >seq8682 Length=13014 Score = 210 bits (232), Expect = 3e-49 Identities = 197/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 178291 ATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAAC 178350 ||||| |||||||||||||| || || || ||||||||||||| ||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 178351 TCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCT 178410 || ||||| | || |||||||| || || |||||||| || ||||| |||||||| ||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 178411 CTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATG 178470 | ||| ||||||| ||||| |||||| | || |||||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 178471 GATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGT 178530 |||||||| || || | || |||||||| || || | ||||||||| ||||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 178531 ATGGAAGTCAT 178541 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 174 bits (192), Expect = 2e-38 Identities = 202/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 178322 TGATCTTCCAATACGCA--TCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGC 178379 || |||||||||| || | ||||||||||||||||| | || || ||||| || || Sbjct 28055 TGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGC 28114 Query 178380 ATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCT 178439 |||||||| | |||| |||||| ||| | ||| ||||||| ||||| |||||| | Sbjct 28115 TTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTT 28170 Query 178440 CAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTG 178499 || ||| || |||||||| | | | |||||||| || | || | | ||||| Sbjct 28171 AAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTG 28230 Query 178500 GGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCA 178559 | |||| || | |||| |||| |||||||| |||||| ||||| || |||||||| || Sbjct 28231 GCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCA 28290 Query 178560 CAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 ||||||||||| ||||| ||| ||| |||| Sbjct 28291 AAACTTCCCTCTAGACCTAGCTACTGTTGAA 28321 >seq7398 Length=4807 Score = 152 bits (168), Expect = 6e-32 Identities = 206/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 179482 CAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTG 179541 ||||||||||| | || || | || || |||| || || || ||||| ||||| |||| Sbjct 2195 CAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTG 2254 Query 179542 CCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATT 179601 | ||||| || ||||| | |||||||| | || || |||||| |||||| |||||| Sbjct 2255 CAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATT 2314 Query 179602 TCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTC 179661 |||||||||| ||||| || || | ||| | |||| | |||| | ||||| Sbjct 2315 TCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTT 2374 Query 179662 TTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATC 179721 | | ||||||| | || |||||||| ||||| || || || | | || || |||| Sbjct 2375 TGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGATC 2434 Query 179722 CTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGT 179768 || | || ||||| ||||||||||| || || || || || ||||| Sbjct 2435 CTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq1209 Length=37697 Score = 152 bits (168), Expect = 6e-32 Identities = 158/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 178255 ggTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 ||||| | ||||||||||| ||||| || | | ||||| |||||||||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 178315 GGTCGCCTGATCTTCCAATACGC--ATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCC 178372 || || ||||||||||||| || || ||||||||||| | ||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 178373 TCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCAT 178432 || || ||||||| || ||||||||||||| ||| | ||| ||||||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 178433 TCAACCTCAACGGTTTCAACTTCAAC 178458 ||||| | || |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178513 AACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTT 178572 ||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 178573 GACCTCGCTGCTGCTGAA 178590 ||||| |||||| |||| Sbjct 75 GACCTAGCTGCTATTGAA 92 >seq22494 Length=12707 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 178354 CGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTT 178413 ||||| | || |||||||| || || |||||||| || |||||||||||||| ||| | Sbjct 7473 CGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTA 7532 Query 178414 GGTGTTAGCACCATGGCATTCAAC 178437 ||| ||||||| ||||| |||||| Sbjct 7533 GGTATTAGCACTATGGCTTTCAAC 7556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596007197847680