Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq8682 192 7e-44 seq16876 159 4e-34 seq7398 147 3e-30 seq1209 141 1e-28 seq3977 95.1 1e-14 >seq8682 Length=13014 Score = 192 bits (212), Expect = 7e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 170045 ATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAAC 170104 ||||| || ||||| ||||| || || || ||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 170105 TCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCT 170164 || ||||| | || |||||||| || || |||||||| || || || |||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 170165 CTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATC 170224 | ||| | ||| ||||| |||||| | || |||||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 170225 GATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGC 170284 ||| |||| |||||||| | || |||||||| || || | ||||||||| |||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 170285 ATGGAAGTGAT 170295 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 159 bits (176), Expect = 4e-34 Identities = 198/270 (73%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 170076 TGATCTTCCAATACGCT--TCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGC 170133 || |||||||||| ||| | ||||||||||||||||| | || || ||||| || || Sbjct 28055 TGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGC 28114 Query 170134 ATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCT 170193 |||||||| | || | |||||| ||| | ||| | ||| ||||| |||||| | Sbjct 28115 TTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTT 28170 Query 170194 GAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTG 170253 || ||| || |||||||| | | | ||| |||| |||| ||| | | ||||| Sbjct 28171 AAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTG 28230 Query 170254 GGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCA 170313 | |||| || | |||| |||| |||||| | |||||| ||||| || |||||||| || Sbjct 28231 GCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCA 28290 Query 170314 CAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 ||||||||||| ||||| ||| ||| ||| Sbjct 28291 AAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 147 bits (162), Expect = 3e-30 Identities = 215/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 171221 TGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGAC 171280 ||| |||| ||| ||||| || || | || ||| || | ||||| | ||||| || Sbjct 2178 TGAGGATGAGGATGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAAC 2237 Query 171281 ATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAA 171340 ||||| ||||||||||| || || || ||||| | || ||||| | || || ||| Sbjct 2238 TTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAA 2297 Query 171341 TAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAG 171400 ||| |||||||| |||||||||||| | ||||| || || | ||| | ||| | ||| Sbjct 2298 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGC 2357 Query 171401 TCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGT 171460 ||| || | ||||| | | |||| || | || ||||| ||||| |||||| | Sbjct 2358 TCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAAT 2417 Query 171461 CAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGA 171520 | | ||| |||||||| | || ||||| ||||||||||| || || || || || | Sbjct 2418 TCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAA 2477 Query 171521 AGGT 171524 |||| Sbjct 2478 AGGT 2481 >seq1209 Length=37697 Score = 141 bits (156), Expect = 1e-28 Identities = 185/254 (73%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 169961 ACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTC 170020 ||||| ||| || || | ||||||| || || || || || | ||||| | ||| Sbjct 32455 ACTTCTAGT-TTATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTC 32513 Query 170021 GGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATC 170080 |||||||| ||||| || | | ||||| || ||||| ||||| || || || ||||| Sbjct 32514 GGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 32573 Query 170081 TTCCAATACGCT--TCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGC 170138 |||||||| ||| | ||||||||||| | ||| | || ||||||| || || |||| Sbjct 32574 TTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGC 32633 Query 170139 CTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACG 170198 ||| || | ||||||||||||||| | ||| | ||| ||| | |||||| |||| | Sbjct 32634 CTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATG 32693 Query 170199 GTTTCAACTTCAAC 170212 ||| || |||||| Sbjct 32694 GTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 170267 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTC 170326 ||||||||| |||||| |||||||| ||||| || ||||||||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 170327 GACCTCGCTGCT 170338 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591900464984960