Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3045 123 2e-23 seq22339 111 1e-19 seq18711 95.1 1e-14 >seq3045 Length=115554 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || ||||| || ||| |||||||||||||| || |||| Sbjct 11495 GCCACCGCGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGC 11554 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| ||| | || || | |||||| ||||| ||||||| | ||| ||||| | ||| Sbjct 11555 AAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGG 11614 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||||| ||| ||| || |||| ||| | | ||||||| |||||||| Sbjct 11615 GATACCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTATCAATAGTGTCGGACGACTCCA 11673 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| || |||||| Sbjct 11674 CCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATG 11723 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| || || || || |||||||| || || ||||||| Sbjct 11723 GCCACCACGGAGCCGGAGCACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAGTCGGC 11782 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || || ||||| || ||||| || || || || ||||| | ||| Sbjct 11783 AAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCGGGGGG 11842 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCA 41813 || | ||||||||| ||| || |||| ||| | || | ||||| ||||||| Sbjct 11843 AATTCCTTCCTTGTCCTGGATCTTG-GCTTTTACGTTGTCAATGGTGTCGGAGGACTCCA 11901 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || || || ||||| || |||||| Sbjct 11902 CCTCGAGGGTGATTGTCTTCCCGGTAAGGGTTTTGACGAAGATTTGCATG 11951 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||||||||| || || | Sbjct 10812 CCACCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 10871 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || || || ||||| || || || |||| | ||| ||||||| ||| Sbjct 10872 AGGGTCCTTCCATCTTCTAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGA 10931 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| ||||||| | || | | | || || |||||| Sbjct 10932 ATTCCCTCCTTGTCC-TGAATTTTTGCCTTCACATTGTCGATTGTATCAGAACTCTCCAC 10990 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || |||||||| ||||| || || |||||||| Sbjct 10991 CTCCAAAGTGATGGTCTTCCCCGTCAGGGTCTTAACAAAGATCTGCAT 11038 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || || ||||||||||||||| ||||| | || || | Sbjct 11049 AGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTT 11108 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || |||| | ||| ||||| | ||| | || ||| Sbjct 11109 CCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCC 11168 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| |||| || | ||| | | | || ||| ||| ||||| | || Sbjct 11169 TTATCC-TGAATTTTCGCCTTAACATTGTCGATGGTATCGGAACTCTCGACCTCAAGGGT 11227 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || |||| ||||| ||||| |||||||| Sbjct 11228 GATGGTTTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 11266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| ||||||| || || || | || || || |||||||||||||| Sbjct 11988 TCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAG 12047 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| || || || |||| ||| | | ||||| ||| || | || || | |||| Sbjct 12048 ATCAAACGTTGCTGATCCGGGGGGATTCCTTCCTTATCC-TGGATCTTGGCCTTAACGTT 12106 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||||| ||||||||||| | || || || || || || || || || || Sbjct 12107 GTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTAAC 12166 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 12167 GAAGATTTGCAT 12178 >seq22339 Length=139203 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || ||||||||| ||||| || || | Sbjct 90310 CCACCACGAAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCA 90369 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || | ||||| |||||||| || || | |||||||| | |||| Sbjct 90370 AGGGTACGACCGTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGA 90429 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| ||| ||| | || | | || || || || || Sbjct 90430 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGA-CGTTATCGATGGTATCAGAGGATTCAAC 90488 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || |||||||| ||||| ||||| |||||||||||||| Sbjct 90489 CTCGAGGGTGATGGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||| || || | | Sbjct 89854 CCACCACGAAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 89913 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || |||||||| || ||||| ||||| | ||| ||||||| || Sbjct 89914 AGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGG 89973 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||||| ||| |||| |||| || | | ||||| ||| ||| Sbjct 89974 ATGCCTTCCTTGTCC-TGAATTTTAGCTTTTACATTATCGATCGTGTCAGAGCT---CTC 90029 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| || || ||||| |||||||| Sbjct 90030 CACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTTTTCACGAAGATCTGCAT 90080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| |||| || ||||||||| ||||||||||| | | || | Sbjct 90091 AGACGAAGCACCAAGTGCAAGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTT 90150 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || ||||| |||| | ||| ||||| | || | | |||| Sbjct 90151 CCATCTTCCAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCC 90210 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTCCACCTCCAC 41820 |||| | || | || || | |||| | | | ||||| ||| ||| ||||| | Sbjct 90211 TTGT-CTTGGATCTTAGCCTTAACGTTGTCAATGGTGTC---CGAACTCTCAACCTCTAG 90266 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || |||| ||||| |||||||||||||| Sbjct 90267 GGTGATGGTCTTGCCGGTCAATGTCTTGACGAAAATCTGCAT 90308 >seq18711 Length=80062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || ||| |||||| ||||| || ||||||| Sbjct 40604 CCACCACGAAGACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCT 40545 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| ||||| |||| | || ||||||| |||| Sbjct 40544 AGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGA 40485 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | || |||| | ||| | || |||| || | | | ||||| ||| || Sbjct 40484 ATACCTTCTTTGT-CTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCT---TTC 40429 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || ||||| ||||| || || ||||| ||||| Sbjct 40428 AACCTCTAGTGTAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCAT 40378 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||| ||| | ||||| ||| || || || || || |||||||| |||| | Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||||||||| || ||||| || || | ||| ||||| | ||| Sbjct 40088 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGA 40029 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || || ||| ||| |||| || | || | | | ||| || || || Sbjct 40028 ATTCCTTCTTTATCC-TGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 39970 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||||| ||||| || || || || || ||||| || ||||| Sbjct 39969 CTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462071414857600