Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9871 104 5e-17 seq9361 104 5e-17 seq8695 104 5e-17 seq8361 104 5e-17 seq8250 104 5e-17 seq7359 104 5e-17 seq7315 104 5e-17 seq6478 104 5e-17 seq6412 104 5e-17 seq5690 104 5e-17 seq6445 100 6e-16 seq5601 86.0 1e-11 seq5800 84.2 5e-11 >seq9871 Length=158272 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 9185 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9244 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9245 CCCACGGTGGGC 9256 >seq9361 Length=1171350 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 134021 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 134080 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 134081 CCCACGGTGGGC 134092 >seq8695 Length=1212325 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 403037 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 403096 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 403097 CCCACGGTGGGC 403108 >seq8361 Length=1239112 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 157186 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 157127 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 157126 CCCACGGTGGGC 157115 >seq8250 Length=1256182 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 898168 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 898109 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 898108 CCCACGGTGGGC 898097 >seq7359 Length=334386 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 63557 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63498 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 63497 CCCACGGTGGGC 63486 >seq7315 Length=336353 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 322026 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 322085 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 322086 CCCACGGTGGGC 322097 >seq6478 Length=5493 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4725 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4784 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4785 CCCACGGTGGGC 4796 >seq6412 Length=440960 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 426744 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 426685 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 426684 CCCACGGTGGGC 426673 >seq5690 Length=548733 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 327419 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 327478 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 327479 CCCACGGTGGGC 327490 >seq6445 Length=439124 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||| |||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 103863 TGCCCGTCTAGTTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 103804 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 103803 CCCCACGGTGGGC 103791 >seq5601 Length=566945 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACTTATGG 230473 ||||||| | || ||||| | || || ||| || ||| ||||||| | | ||| Sbjct 476316 GGAGTTCGTGTGCGACGCGCTGCCGTG-CGCATTGGTGGGGATGAACGGGGCGTTGATGA 476258 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 | |||||||| || || || || || | | || | ||| || || | || ||| |||| Sbjct 476257 GTCAGTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGCGCTCGGGTGCGGGAAGGTGT 476198 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 || | | ||| || |||| | |||||| | |||||||| ||||||||||| || | Sbjct 476197 ACGGCGTGACGAATCCGTTTGATTGGATGGAGTTGATTTCGCTGCAAGGGAAGACGAATT 476138 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||| || ||| | ||| | || || || | | || ||||||| Sbjct 476137 TCTTTGAGAAGAGAGTCGGGGAATACCAAAAGGCTTCTGTGATG 476094 >seq5800 Length=1605952 Score = 84.2 bits (92), Expect = 5e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||| ||||| | || |||| || ||||| ||||||||||||||| Sbjct 184053 CGTCTAGCTCAGTCGGTAAAGCGCAACGCTCTTAACCTTGTGGTAGTGGGTTCGAGCCCC 183994 Query 165773 ACGATGGGC 165781 ||| ||||| Sbjct 183993 ACGGTGGGC 183985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057621851486450