Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9360 167 2e-36 seq5601 134 1e-26 >seq9360 Length=2047533 Score = 167 bits (184), Expect = 2e-36 Identities = 568/873 (65%), Gaps = 19/873 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| | ||||| || || ||||| || || | || || || || Sbjct 1278306 TTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCT 1278247 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||||||||| | || | | || |||||| || | | | | Sbjct 1278246 CCATCCAATCAAAAGGATTCGCCACTCCGTACAGCTTCCCGTACCCAAGCGCACCCAACA 1278187 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||||| ||||| ||||| || || | ||| ||||| | ||||| || | | || Sbjct 1278186 ATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCA-AC 1278128 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAA-TAAT 16911 | | ||| || || || || ||| | |||||| | ||||| ||||| | ||| Sbjct 1278127 GCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAAC 1278068 Query 16912 ACTAGCAACTCGTTCCTCGGACGG---TGTA-TGTTTAAGATGTTTAAACATCAGACATG 16967 | || ||| |||||| | ||| | ||| ||| ||| ||| || | Sbjct 1278067 GCCTTCA-CTCTCTCCTCGCTTAGCTTTGTCCTCAATAAACTGT----ACAACAGGCACG 1278013 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 |||||||||| || | ||||| |||| ||| | ||||| || ||||| || || | Sbjct 1278012 CGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCG 1277953 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || || || || | ||||||||||||| || ||| || ||||| || | Sbjct 1277952 GCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCC 1277893 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 |||| ||| | |||||||||||||||| || ||| | ||| | || || |||| Sbjct 1277892 CCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGT--CG-ATCC 1277836 Query 17148 ATTTCTGCACCCACTCGGCTT--TTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | || | ||||| ||||| ||||| | ||| | ||| || ||||| | ||| Sbjct 1277835 AATTTAACGCCCACGTGGCTTTCTTTGC--GACGCAGGGAACCGTCTCGATGGCGTGAAA 1277778 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | | ||||| | ||| | || || || || | || || ||||||||| Sbjct 1277777 GAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 1277718 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTG 17325 |||||| |||||||| ||||| || || || ||||| ||| || || || || | || Sbjct 1277717 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTG 1277658 Query 17326 AACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 || ||| ||| | | | || || || ||| |||||||||||| || ||||| Sbjct 1277657 GACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAA 1277598 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 || || | | ||| | | ||| | || ||||| | || || | ||||| Sbjct 1277597 GAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 1277538 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 | ||||| || | ||| ||||| || | ||||||||| || | || || || || Sbjct 1277537 GAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 1277478 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| | |||||| | ||| || || ||||| Sbjct 1277477 CATTTCCCAAATTTGTGGGTACTGAATCGGGAA 1277445 >seq5601 Length=566945 Score = 134 bits (148), Expect = 1e-26 Identities = 315/468 (67%), Gaps = 7/468 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | ||| || |||| ||| || ||||| || | Sbjct 476390 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 476449 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG-AACGACCCA 17074 | || | || ||||| || || || || ||||||||||||||| | ||| |||| Sbjct 476450 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTACCC- 476508 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 || |||||||| || || ||| | |||||||| || | || || ||| | ||| | Sbjct 476509 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 476568 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 || || ||||| || | |||| ||||| |||| | ||| || |||||| Sbjct 476569 CCGT--CG-ATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 476625 Query 17195 ATGGCCTTAAATAA-TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253 | ||| |||||| ||| ||||| | || |||| ||||| || | || || Sbjct 476626 AAGGCGCGAAATAAGCGGCTC-TTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAG 476684 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 ||||||||||||||| |||||||| ||||| || || || ||||| ||| || || Sbjct 476685 CGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGC 476744 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || | | ||| ||||| ||| | | || || |||||| ||||| ||||| Sbjct 476745 CTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTC 476804 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 |||||||| || || | | ||| | ||||| | ||| ||||| Sbjct 476805 CGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTC 476852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517449110092200