Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9360 149 7e-31 seq5601 138 1e-27 seq5512 111 2e-19 seq5989 87.8 2e-12 seq5924 87.8 2e-12 >seq9360 Length=2047533 Score = 149 bits (164), Expect = 7e-31 Identities = 399/606 (66%), Gaps = 8/606 (1%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| || || |||||||||||||| |||||||| |||| || || ||||| || | Sbjct 1278024 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1277965 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || | ||| ||||||| || |||||||| ||||||||||| | |||||| | || Sbjct 1277964 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 1277906 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA---CCGGCG 24302 || |||||||| || || || ||||| || || | ||| || | || | | | Sbjct 1277905 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1277846 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| ||| ||||| ||| |||||| || || || | ||||| Sbjct 1277845 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 1277789 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 1277788 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 1277729 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 1277728 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 1277669 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| | ||| || || | || | | | || | || || || || ||||| Sbjct 1277668 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 1277609 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 1277608 GAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 1277549 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 1277548 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 1277489 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 24722 || || || ||||| | ||| || | | || ||||| || || || ||||| || Sbjct 1277488 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 1277429 Query 24723 GGATTT 24728 |||||| Sbjct 1277428 GGATTT 1277423 >seq5601 Length=566945 Score = 138 bits (152), Expect = 1e-27 Identities = 386/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 476390 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 476449 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 476450 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTACCC 476508 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAAC-CGGCG 24302 || ||||| || ||||| || ||||| || || ||||| || | || | | | | Sbjct 476509 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 476568 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| ||| | |||||||||||||| || || || |||| || || Sbjct 476569 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 476625 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 | || ||| | | | ||||| | | ||| | || || || | | || Sbjct 476626 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 476685 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 476686 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 476745 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| | || |||||| | || | | || | ||||| || |||||||| Sbjct 476746 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCC 476805 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 476806 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGAT 476865 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 476866 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 476925 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || || || ||||| | |||||| || | || || |||||||| || Sbjct 476926 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 476972 >seq5512 Length=582012 Score = 111 bits (122), Expect = 2e-19 Identities = 381/587 (65%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || || | ||||| |||| ||||| || | Sbjct 61180 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTTGTCTCGCGAGATTAGCTCGTTTGAGA 61239 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 || || || ||||||| ||||||||||| | ||||||||| | |||| || || Sbjct 61240 TGGTTAGCCCCGGCATTAACCCACGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 61298 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC-- 24303 || || || || ||||| || ||||| || || |||| ||||| | | | | | Sbjct 61299 GAGAAAAATATCCCTTCCACACAAGCAAACGCTATCAGTC--TCTCCGTGAATGTCTCCG 61356 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | | | ||| | ||| | |||||||| ||||| || || || |||| || || | Sbjct 61357 AGCCGTCGATCTAATTTCGGGCCCAATCTGCCTT-TTGGCAACTCACGGCACCGTTTCAA 61415 Query 24364 TAGCATTAAAGAGATAGtttttttCATTA-CTATCTTTAACATATGTATCAATCAAAAGA 24422 | || ||| | | | ||||| | | | ||| | || || || | | || Sbjct 61416 TGGCGCGAAATAAGCGGCTCTTTTCGTCAGAGTTTTTTTATGTAAGTTTCTAGAAGGAGC 61475 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||| || || | ||| | ||||| ||||| || | |||||| | ||| Sbjct 61476 GAGTACATTTCGGAGTGGACGTTCTTGATGGCGATTTGGAAGCTGTAGAAGGCACGCGCC 61535 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 ||| | || |||||| | |||| |||| | ||||| || |||||||| Sbjct 61536 TCGAAGACATGGACTTCTTTCATGAATCTGGCTGCGAGGTTTTCGAGGACGATTCCGTCC 61595 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 ||| || ||||| || | || ||| | || || | ||| ||||| | ||||| Sbjct 61596 GAGGCAGCGAAAAAGGCGAGCACGTGTGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 61655 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| | ||| || | | | || | || || | ||||||||||| || || Sbjct 61656 TCCCACTGGCGGATGTCCTGCAACAGGTCAAGCTCCTCTGCCGTCCAAAATGAAGCTTCG 61715 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || || || ||||| | |||||| || | || || |||||||| || Sbjct 61716 GCTTTCTTGTACATTTCCCAGATTTCTGGGTACTGGATTGGAAACAT 61762 >seq5989 Length=495927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 124853 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 124794 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 124793 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 124734 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 124733 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 124674 Query 54365 CCCTCTATACTATCATCCATCAT 54387 || || ||||||||||| |||| Sbjct 124673 CCTTCAATACTATCATCTTTCAT 124651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 135395 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 135336 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 135335 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 135276 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 135275 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 135216 Query 54365 CCCTCTATACTATCATCCATCAT 54387 || || ||||||||||| |||| Sbjct 135215 CCTTCAATACTATCATCTTTCAT 135193 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 124524 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 124465 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | ||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 124464 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 124406 Query 54543 ACATGTGCTGAGGTCTTTCAAC 54564 |||| |||||||||||||| || Sbjct 124405 ACATATGCTGAGGTCTTTCTAC 124384 >seq5924 Length=8700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 7213 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 7272 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 7273 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 7332 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 7333 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 7392 Query 54365 CCCTCTATACTATCATCCATCAT 54387 || || ||||||||||| |||| Sbjct 7393 CCTTCAATACTATCATCTTTCAT 7415 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 7542 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 7601 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || | ||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 7602 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 7660 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTT 54570 |||| |||||||||||||| || | ||| Sbjct 7661 ACATATGCTGAGGTCTTTCTACAACCTT 7688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593610908029200