Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9360 154 2e-32 seq5601 147 3e-30 seq5512 123 3e-23 seq5989 91.5 2e-13 seq5924 91.5 2e-13 >seq9360 Length=2047533 Score = 154 bits (170), Expect = 2e-32 Identities = 405/614 (66%), Gaps = 8/614 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || || |||||||||||||| |||||||| |||| || || ||||| || | Sbjct 1278024 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1277965 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 | || | ||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 1277964 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 1277906 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33749 || ||||| || || || || |||||| || || | |||||| | || | | | Sbjct 1277905 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1277846 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 1277845 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 1277789 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 1277788 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 1277729 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 1277728 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 1277669 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| | ||| || || || || | | | || | || || || || || || Sbjct 1277668 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 1277609 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 1277608 GAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 1277549 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 1277548 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 1277489 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 34169 || || || ||||| | ||| || | | || || || ||||| || ||||| || Sbjct 1277488 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 1277429 Query 34170 GGATTTGGTGCAAG 34183 |||||||| || || Sbjct 1277428 GGATTTGGGGCTAG 1277415 >seq5601 Length=566945 Score = 147 bits (162), Expect = 3e-30 Identities = 386/586 (66%), Gaps = 6/586 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 476390 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 476449 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 476450 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTACCCG 476509 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGC 33750 | ||||| || ||||| || |||||| || || |||||||| | || | | | || Sbjct 476510 AGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 476569 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| ||| | |||||||||||||| || || || |||| |||||| | Sbjct 476570 CGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAA 476626 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 476627 AGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCG 476686 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||| || || ||||| || ||||| || || || |||||||| | |||| Sbjct 476687 AGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCT 476746 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| | || |||||| | || | | || | ||||| || ||||| || Sbjct 476747 CGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCCG 476806 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||| || || || || | || || | || || | ||| ||||| | ||||| | Sbjct 476807 AGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATT 476866 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | ||| || | || | || || || ||| | ||||||||||| || || | Sbjct 476867 CCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGG 476926 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 | || || ||||| | |||||| || | || |||||||| || || Sbjct 476927 CTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 476972 >seq5512 Length=582012 Score = 123 bits (136), Expect = 3e-23 Identities = 383/587 (65%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || || | ||||| |||| ||||| || | Sbjct 61180 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTTGTCTCGCGAGATTAGCTCGTTTGAGA 61239 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 || || || ||||||| ||||||||||| | ||||||||| | ||| || | Sbjct 61240 TGGTTAGCCCCGGCATTAACCCACGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCG 61299 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC--TCCATAAC-CGGCGC 33750 | || || || ||||| || |||||| || || |||||||| | || | | | || Sbjct 61300 AGAAAAATATCCCTTCCACACAAGCAAACGCTATCAGTCTCTCCGTGAATGTCTCCGAGC 61359 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||| | ||| | |||||||| ||||| || || || |||| |||||| | Sbjct 61360 CGTC---GATCTAATTTCGGGCCCAATCTGCCTT-TTGGCAACTCACGGCACCGTTTCAA 61415 Query 33811 TGGCATTAAAGAGATAGtttttttCATTA-CTATCTTTAACATAAGTATCGATCAAAAGA 33869 |||| ||| | | | ||||| | | | ||| | ||||| || | | || Sbjct 61416 TGGCGCGAAATAAGCGGCTCTTTTCGTCAGAGTTTTTTTATGTAAGTTTCTAGAAGGAGC 61475 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || | ||| | ||||| || || || | |||||| | ||| Sbjct 61476 GAGTACATTTCGGAGTGGACGTTCTTGATGGCGATTTGGAAGCTGTAGAAGGCACGCGCC 61535 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 ||| | || |||||| | |||| |||| | ||||| || ||||| || Sbjct 61536 TCGAAGACATGGACTTCTTTCATGAATCTGGCTGCGAGGTTTTCGAGGACGATTCCGTCC 61595 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 ||| || ||||| || | || ||| | || || | ||| ||||| | ||||| Sbjct 61596 GAGGCAGCGAAAAAGGCGAGCACGTGTGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 61655 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| | ||| || | | | || | || || | ||||||||||| || || Sbjct 61656 TCCCACTGGCGGATGTCCTGCAACAGGTCAAGCTCCTCTGCCGTCCAAAATGAAGCTTCG 61715 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || || || ||||| | |||||| || | || |||||||| || || Sbjct 61716 GCTTTCTTGTACATTTCCCAGATTTCTGGGTACTGGATTGGAAACAT 61762 >seq5989 Length=495927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 124524 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 124465 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 124464 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 124406 Query 63781 ACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||||||||||| |||| Sbjct 124405 ACATATGCTGAGGTCTTTCTACAA 124382 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 135066 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 135007 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | || ||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 135006 GTATGTTTTAA-AGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 134949 Query 63781 ACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||||||||||| |||| Sbjct 134948 ACATATGCTGAGGTCTTTCTACAA 134925 >seq5924 Length=8700 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 7542 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 7601 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 7602 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 7660 Query 63781 ACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||||||||||| |||| Sbjct 7661 ACATATGCTGAGGTCTTTCTACAA 7684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629700178381200