Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5989 109 5e-19 seq5924 109 5e-19 seq7036 82.4 7e-11 >seq5989 Length=495927 Score = 109 bits (120), Expect = 5e-19 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 38390 AACTAGACATT--TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 ||||| |||| || ||| ||||||||| || ||||| | ||||||||||||||| | Sbjct 124548 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 124489 Query 38448 GAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507 ||||||| ||| |||| || ||||||| || || ||| |||||| | ||| Sbjct 124488 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 124429 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || | ||| |||||||| | |||||| || |||||||||| Sbjct 124428 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTA 124385 Score = 105 bits (116), Expect = 6e-18 Identities = 123/164 (75%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 38390 AACTAGACATT--TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 ||||| |||| || ||| ||||||||| || ||||| | ||||||||||||||| | Sbjct 135090 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 135031 Query 38448 GAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507 ||||||| ||| |||| || ||||||| || || ||| |||||| | ||| Sbjct 135030 GAACCATCTTTGGGACATCATATGGTATGTTT-TAAAGCAGAATCAATATCATCCTTGTG 134972 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || | ||| |||||||| | |||||| || |||||||||| Sbjct 134971 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTA 134928 >seq5924 Length=8700 Score = 109 bits (120), Expect = 5e-19 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 38390 AACTAGACATT--TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 ||||| |||| || ||| ||||||||| || ||||| | ||||||||||||||| | Sbjct 7518 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 7577 Query 38448 GAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507 ||||||| ||| |||| || ||||||| || || ||| |||||| | ||| Sbjct 7578 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 7637 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || | ||| |||||||| | |||||| || |||||||||| Sbjct 7638 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTA 7681 >seq7036 Length=357795 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 ||| ||||| || ||||| | ||| ||||||||||| | |||||| || |||| Sbjct 206695 TGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCAT 206754 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 || ||||||| || || ||| || ||| | |||||| || | || |||||||| Sbjct 206755 ATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGCAACCCTCAT 206814 Query 38529 TAGCATATGTTGTGGTCTTTCTA 38551 | ||||||||| |||||||||| Sbjct 206815 CAACATATGTTGGGGTCTTTCTA 206837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468437449407600