Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq9360 107 2e-18 seq5856 89.7 5e-13 seq5601 87.8 2e-12 >seq9360 Length=2047533 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| ||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 1278016 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 1277957 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| || || || ||||| | ||||||||| || ||| ||| || ||||| Sbjct 1277956 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 1277897 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 || ||||| || ||||||||| ||||||| ||||| Sbjct 1277896 ATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 1277861 >seq5856 Length=517404 Score = 89.7 bits (98), Expect = 5e-13 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| ||||| |||||||||||| ||||| |||||||| || || || Sbjct 166127 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 166186 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| | ||||| | ||| ||||| ||| |||| Sbjct 166187 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA-CAAA 166229 >seq5601 Length=566945 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 476395 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 476454 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATAT--TGCAGCAAATGACCCGGAAA 13986 | || ||||| || || || ||||| ||||||||||| |||| ||| |||| || | Sbjct 476455 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAG-AAACTACCC-GAGA 476512 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 ||||||| || || || |||||||||||| | || ||||| Sbjct 476513 AGAATATCCCTTCCACGCAAGCAAACGCTATCAGTC--TCTCC 476553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479638560711000