Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9360 96.9 3e-15 seq5856 89.7 5e-13 seq5601 89.7 5e-13 >seq9360 Length=2047533 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 ||||| ||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 1278016 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 1277957 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 13778 || ||||| || || || ||||| | ||||||||| || || || | || || ||||| Sbjct 1277956 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGAA 1277898 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCC 13817 || ||||| || ||||||||| |||| || ||||| Sbjct 1277897 AATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 1277861 >seq5856 Length=517404 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| ||||| |||||||||||| ||||| |||||||| || || || Sbjct 166127 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 166186 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 166187 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA 166225 >seq5601 Length=566945 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 476395 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 476454 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | || ||||| || || || ||||| ||||||||||| || ||| || || ||| Sbjct 476455 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTACCCGAGAAG 476514 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCC 13817 ||||| || || || |||||||||||| |||| ||||| Sbjct 476515 AATATCCCTTCCACGCAAGCAAACGCTATCAGTC--TCTCC 476553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478499573100600