Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9360 178 2e-39 seq5601 156 6e-33 seq5512 125 1e-23 seq5924 95.1 2e-14 seq5989 91.5 2e-13 seq7036 84.2 3e-11 >seq9360 Length=2047533 Score = 178 bits (196), Expect = 2e-39 Identities = 413/620 (67%), Gaps = 2/620 (0%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || |||||||||||||| ||||||||||||| || || ||||| || | Sbjct 1278024 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1277965 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || | ||| ||||||| || |||||||| ||||||||||| | |||||| | || Sbjct 1277964 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 1277906 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || ||||| || || || || ||||| || || | |||||| | || | | Sbjct 1277905 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1277846 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| ||| ||||| ||| |||||| || || || | ||| || ||| Sbjct 1277845 CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATG 1277786 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 1277785 GCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAG 1277726 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || || ||||| || ||||| || || || |||||||| | |||||| Sbjct 1277725 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCG 1277666 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | ||||| || || || || | | | || | || ||| || || ||||| | Sbjct 1277665 GCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 1277606 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 ||||| || || || | || || | | || | || ||||| | |||| | | Sbjct 1277605 GCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCC 1277546 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || | || ||||| || | ||| ||||| || | |||||||| || ||||| || Sbjct 1277545 CAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCT 1277486 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 || || ||||| | ||| || | | || ||||| ||||| || ||||| || ||| Sbjct 1277485 TTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGA 1277426 Query 42656 TTTGGTGCAAGGATCGGTTC 42675 ||||| || || | ||| || Sbjct 1277425 TTTGGGGCTAGCAGCGGCTC 1277406 >seq5601 Length=566945 Score = 156 bits (172), Expect = 6e-33 Identities = 390/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||| || || ||||||| |||| ||||| || | Sbjct 476390 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 476449 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || || || ||||||| || |||||||| | ||||||||| | |||| | | || Sbjct 476450 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTACCC 476508 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCA 42232 || ||||| || ||||| || ||||| || || |||||||| | || | | | Sbjct 476509 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 476568 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| ||| | |||||||||||||| || || || |||| |||||| Sbjct 476569 CCGTCG---ATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 476625 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 | ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 476626 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 476685 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 476686 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 476745 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 |||| || || |||||| | || | | || | |||||| || |||||||| Sbjct 476746 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCC 476805 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 ||| || || || || | || || | || || | ||| ||||| | |||| Sbjct 476806 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGAT 476865 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| | ||| || | || | || || || || ||||||||||||| ||||| Sbjct 476866 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 476925 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 || || || ||||| | |||||| || | || || ||||| || || Sbjct 476926 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 476972 >seq5512 Length=582012 Score = 125 bits (138), Expect = 1e-23 Identities = 406/623 (65%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||| || || | |||| |||| ||||| || | Sbjct 61180 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTTGTCTCGCGAGATTAGCTCGTTTGAGA 61239 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 || || || ||||||| ||||||||||| | ||||||||| | |||| || || Sbjct 61240 TGGTTAGCCCCGGCATTAACCCACGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 61298 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-- 42233 || || || || ||||| || ||||| || || || ||||||| | | | | | Sbjct 61299 GAGAAAAATATCCCTTCCACACAAGCAAACGCTATCAG--TCTCTCCGTGAATGTCTCCG 61356 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | | ||| | ||| | |||||||| ||||| || || || |||| |||||| | Sbjct 61357 AGCCGTCGATCTAATTTCGGGCCCAATCTGCCTT-TTGGCAACTCACGGCACCGTTTCAA 61415 Query 42294 TGGCATTAAAGAGATAGtttttttCATTA-CTATCTTTAACATATGTATCGATCAAAAGA 42352 |||| ||| | | | ||||| | | | ||| | || || || | | || Sbjct 61416 TGGCGCGAAATAAGCGGCTCTTTTCGTCAGAGTTTTTTTATGTAAGTTTCTAGAAGGAGC 61475 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||||||| || || | ||| | ||||| || || || | |||||| | ||| Sbjct 61476 GAGTACATTTCGGAGTGGACGTTCTTGATGGCGATTTGGAAGCTGTAGAAGGCACGCGCC 61535 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 ||| || || |||||| | |||| | || | |||||| || |||||||| Sbjct 61536 TCGAAGACATGGACTTCTTTCATGAATCTGGCTGCGAGGTTTTCGAGGACGATTCCGTCC 61595 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 ||| || ||||| || | || ||| | || || | ||| ||||| | |||| Sbjct 61596 GAGGCAGCGAAAAAGGCGAGCACGTGTGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 61655 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| | ||| || | | | || | || ||| ||||||||||||| ||||| Sbjct 61656 TCCCACTGGCGGATGTCCTGCAACAGGTCAAGCTCCTCTGCCGTCCAAAATGAAGCTTCG 61715 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 || || || ||||| | |||||| || | || || ||||| || || ||| ||| Sbjct 61716 GCTTTCTTGTACATTTCCCAGATTTCTGGGTACTGGATTGGAAACATGCAGGATCGGTTT 61775 Query 42653 GGATTTGGTGCAAGGATCGGTTC 42675 || || || | || | |||||| Sbjct 61776 GGGTTCGGGGTTAGCAGCGGTTC 61798 >seq5924 Length=8700 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | |||||||| || || || |||||| ||| |||| | || Sbjct 7542 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 7601 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | |||||| || || ||||| | ||| || ||||| | | || | ||| | Sbjct 7602 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 7660 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 7661 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 7720 Query 72596 AAGTTTTAAAACCAAAATA 72614 ||||| || ||||| || Sbjct 7721 GGGTTTTGAAGCCAAAGTA 7739 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 7213 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 7272 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| || || || || ||||| |||||| | |||||||| ||| || ||| Sbjct 7273 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 7332 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 7333 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 7392 Query 72358 CCCTCTATACTATCATCCATCAT 72380 || || ||||||||||| |||| Sbjct 7393 CCTTCAATACTATCATCTTTCAT 7415 >seq5989 Length=495927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | |||||||| || || || |||||| ||| |||| | || Sbjct 124524 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 124465 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | |||||| || || ||||| | ||| || ||||| | | || | ||| | Sbjct 124464 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 124406 Query 72536 ACATATGCTGAGGTCTTTCAAC 72557 ||||||||||||||||||| || Sbjct 124405 ACATATGCTGAGGTCTTTCTAC 124384 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 124853 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 124794 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| || || || || ||||| |||||| | |||||||| ||| || ||| Sbjct 124793 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 124734 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 124733 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 124674 Query 72358 CCCTCTATACTATCATCCATCAT 72380 || || ||||||||||| |||| Sbjct 124673 CCTTCAATACTATCATCTTTCAT 124651 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 135395 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 135336 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| || || || || ||||| |||||| | |||||||| ||| || ||| Sbjct 135335 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 135276 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 135275 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 135216 Query 72358 CCCTCTATACTATCATCCATCAT 72380 || || ||||||||||| |||| Sbjct 135215 CCTTCAATACTATCATCTTTCAT 135193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | |||||||| || || || |||||| ||| |||| | || Sbjct 135066 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 135007 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | || ||| || || ||||| | ||| || ||||| | | || | ||| | Sbjct 135006 GTATGTTTTAA-AGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 134949 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 134948 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 134889 Query 72596 AAGTTTTAAAACCAAAATA 72614 ||||| || ||||| || Sbjct 134888 GGGTTTTGAAGCCAAAGTA 134870 >seq7036 Length=357795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| ||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 206334 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 206393 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||| ||||| | |||||||| ||| || ||| Sbjct 206394 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 206453 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 206454 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 206513 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 206514 CCTTCAATACTATCATCTTTCATG 206537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671014074485400