Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5889 111 2e-19 seq3221 98.7 1e-15 seq1028 98.7 1e-15 seq7271 87.8 2e-12 >seq5889 Length=513596 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||||| || ||||| ||||| || ||||||||| Sbjct 196889 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 196830 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||||||| ||||| || || |||||||||| ||||| || ||||| Sbjct 196829 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 196770 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 196769 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 196710 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 143190 ||| | ||| | ||||||||||| | ||||| ||||| || ||||| | ||| Sbjct 196709 TTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCGTTTA 196656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||| ||||| || || ||||||||||| || |||| ||| |||||||| Sbjct 197092 TGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCGTCCTCGAGTTGC 197033 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || ||||||| | ||||| || || || || ||||| ||||| || || Sbjct 197032 TTTCCTGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTG 196973 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | |||||| | | || ||||| | ||| | ||||||||||| Sbjct 196972 GCCTTGACGTTGTCGATCGTGTCGGAGCTCTCAACTTCGAGAGTAATGGTCTTGCCGGTT 196913 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| || ||||| Sbjct 196912 AGGGTTTTCACGAAGATCTGCAT 196890 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||| ||||| || || ||||||||||| || |||| ||| |||||||| Sbjct 197320 TGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCGTCCTCGAGTTGC 197261 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || ||||||| | ||||| || || || || ||||| ||||| || || Sbjct 197260 TTTCCTGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTG 197201 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | |||||| | | || ||||| | ||| | ||||| || || Sbjct 197200 GCCTTGACGTTGTCGATCGTGTCGGAGCTCTCAACTTCGAGAGTAATGGTCTTTCCCGTT 197141 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| |||||||| ||||| Sbjct 197140 AGGGTTTTGACGAATATCTGCAT 197118 >seq3221 Length=646307 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||||| || || || || || |||||||||||| Sbjct 291265 GCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 291324 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||| || || |||||| |||| || | ||||| || || || Sbjct 291325 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGG 291384 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || |||| | || | ||||||| | || || Sbjct 291385 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATAGTGTCCGAGCTCTCGAC 291444 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || ||||||||||| ||||| ||||| || |||||| Sbjct 291445 TTCGAGAGTAATAGTTTTGCCGGTCAAGGTTTTCACGAAGATCTGCATA 291493 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 211875 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCT 211934 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| ||||| || || || || || || ||||| || || || Sbjct 211935 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 211994 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| | ||| Sbjct 211995 ACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 212054 Query 143168 TTTACGAATATTTGCAT 143184 || || ||||| ||||| Sbjct 212055 TTCACAAATATCTGCAT 212071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 219970 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGTTGCTTTCCG 220029 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| | ||||| |||||||| || || || ||||| || || || Sbjct 220030 GCGAAGATCAGCCTCTGCTGGTCGGGAGG-ATTCCCTCCTTGTCTTGGATCTTGGCCTTC 220088 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | || | |||||| ||||||| ||| Sbjct 220089 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTCAGGGTT 220148 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 220149 TTGACGAAGATCTGCAT 220165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | || ||||||||||| |||||||||||| || || | |||||| Sbjct 261593 AACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTC 261652 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || || || ||||||| | ||||| |||||||| || || || ||||| Sbjct 261653 GAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTG 261712 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | |||||| | | || || || | || | |||||| Sbjct 261713 GATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTT 261772 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| ||||| ||||| || ||||| Sbjct 261773 CCCGGTCAGGGTTTTGACGAAGATCTGCAT 261802 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 |||||| || | ||||| || || || || || ||||||||||| | || || Sbjct 211628 ACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCC 211687 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || |||||| ||||||| || |||||||| || || || ||||| || Sbjct 211688 ATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCTTCCTT 211747 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| |||||| || | | || | ||||| | | || ||||| | ||| | Sbjct 211748 GTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCCAGAGTGAT 211807 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || |||| ||||| ||||| || ||||| Sbjct 211808 CGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 211843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| || |||| ||||||||||| || || Sbjct 261834 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 261893 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| |||||||| ||||| || || || ||||| || || || Sbjct 261894 GCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 261953 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 261954 ACGTTGTCGATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 262013 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 262014 TTCACGAAGATCTGCATA 262031 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| || |||| ||||||||||| || || Sbjct 220197 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 220256 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| |||||||| ||||| || || || ||||| || || || Sbjct 220257 GCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 220316 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 220317 ACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 220376 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 220377 TTCACAAAGATCTGCATA 220394 >seq1028 Length=430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 347 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGTTGCTTTCCG 288 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| | ||||| |||||||| || || || ||||| || || || Sbjct 287 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 228 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | || | |||||| ||||||| ||| Sbjct 227 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTCAGGGTT 168 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 167 TTGACGAAGATCTGCAT 151 >seq7271 Length=339586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || ||||||| || ||||| || || |||||||| || | ||||| || | || || Sbjct 98600 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCA-TCCTC 98542 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||||| ||| |||| || | |||||| || || || || ||||| ||||| Sbjct 98541 TAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 98482 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | || | ||||| | | || ||||| | || | || || Sbjct 98481 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTTT 98422 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| ||||| || ||||| ||||| Sbjct 98421 ACCAGTCAGGGTTTTCACAAATATCTGCAT 98392 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| |||||||||||| |||| || | |||||||| || || || ||||| ||| Sbjct 55377 TCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTG 55318 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||||| | || | ||||| | | ||| || |||| || | Sbjct 55317 TCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATT 55258 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | ||||| || || |||||||| Sbjct 55257 GTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 55223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506919873502800