Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9360 122 1e-22 >seq9360 Length=2047533 Score = 122 bits (134), Expect = 1e-22 Identities = 375/564 (66%), Gaps = 26/564 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| || || | || || |||||||| | || || || ||||| Sbjct 1277466 ATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATCTT 1277525 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 || | || || | | |||||| | | | || | |||| ||||| || | Sbjct 1277526 TCGCAAGATCTCCGCCACTGGGAGGCCC---TAACCG---CTGA-CGAGAAGCACTTCGT 1277578 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 ||||| | | |||||||| || | |||||| || |||||| ||| || || Sbjct 1277579 CACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGG 1277638 Query 125195 ACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAAT 125251 | | ||| ||| | ||| || | |||| | ||||| || ||||| |||||||| Sbjct 1277639 AAGGTTCATGACGGAGGT--CCAGGTCGCCGAGGCG-CGTGCCTTCTACGGCTTCCAAAT 1277695 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 | || |||||| | ||||| ||||||||||| || | || | ||||| || Sbjct 1277696 CGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGA 1277755 Query 125312 -TCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| ||| ||| | | |||||| |||| ||||| ||||| || | | || ||| Sbjct 1277756 CTCCG--ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGT-CGCAAA 1277812 Query 125370 -AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 || || |||| | | |||||||| | | || ||| ||| || ||| | Sbjct 1277813 GAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTT---CGCGGAGAGATT 1277869 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 | || || || ||| ||||| || ||||| || || |||||| || || ||||| Sbjct 1277870 AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTG 1277929 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||| |||||||| | ||||| ||| | || | |||||||| || || ||||| Sbjct 1277930 GCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGA 1277989 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 ||||| || ||||| || || || Sbjct 1277990 TGAGGGTCTCCACTGCGATTTCGC 1278013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740921038775400