Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq7271 98.7 7e-16
seq3221 98.7 7e-16
seq5889 89.7 4e-13
>seq7271
Length=339586
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||||||||| || || || || |||||||| || || | | | || |||
Sbjct 98600 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 98541
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| |||||| || || | || | | ||| ||||| ||| || ||||| ||||| |
Sbjct 98540 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 98481
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| || ||| | || ||||| ||| | || || || ||||| || ||||||
Sbjct 98480 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTTTA 98421
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| ||||| ||||| || |||||
Sbjct 98420 CCAGTCAGGGTTTTCACAAATATCTGCAT 98392
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| || ||||||||||| || || || ||||| ||||| || | || | |||||
Sbjct 99285 AACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGCAAGGGTCCTACCATCTTC 99226
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| || |||||||| | ||||| | || |||||| ||||| || || || ||
Sbjct 99225 AAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTG 99166
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| ||| ||| ||| | |||||||| || | |||| || || || || ||||| ||
Sbjct 99165 GATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTCCACCTCCAAAGTGATGGTCTT 99106
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| ||| || ||||| || ||||||
Sbjct 99105 CCCAGTCAAAGTCTTCACAAAGATCTGCATA 99075
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || ||||| || || || || |||||||| || |||| | | | |||||
Sbjct 95187 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCTTCA 95128
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| |||||||||||| | ||||| | || || ||| || || || || ||||| |
Sbjct 95127 AGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGA 95068
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | || || || || |||| || || || || || ||||||
Sbjct 95067 ATCTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTTA 95008
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| ||||| ||||| |||||||| ||||||
Sbjct 95007 CCAGTCAGGGTTTTCACAAAAATCTGCATA 94978
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| || | || ||| || || ||||| || ||||| || || || |||||||||||
Sbjct 99530 CCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCA 99471
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | ||| | ||||| | || ||||| || | ||||| | || ||||| ||||
Sbjct 99470 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 99411
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || || || || || ||| ||| ||| | || || || || | | |||||
Sbjct 99410 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 99351
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | || || ||||| || || ||||| || ||||||||||||||
Sbjct 99350 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 99304
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||||||||| || || || || |||||||| || || | | | || ||
Sbjct 94959 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 94900
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| |||||||||||| | || | | ||| ||||| ||| || ||||| || || |
Sbjct 94899 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 94840
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| || ||| | || ||||| || |||| || || | ||||||||| ||
Sbjct 94839 ATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTT 94780
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || |||||||| ||||||||
Sbjct 94779 CCAGTGAGGGTCTTTACAAAGATTTGCAT 94751
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||| ||||| || || || || ||||| ||| || | || | |||||
Sbjct 99056 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 98997
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || ||||| | || | | || ||||| || || ||||| ||||| |
Sbjct 98996 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 98937
Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| || ||| || ||| | || || ||||| | | || || |||||||||||||| ||
Sbjct 98936 ATCTTAGCT-TTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTT 98878
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| || ||||| |||||||||
Sbjct 98877 GCCAGTAAGAGTCTTAACAAAGATTTGCATA 98847
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||||||||| || || || || |||||||| || || | | | || |||
Sbjct 55887 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 55828
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| |||||| || || | || | | ||| ||||| ||| || ||||| || || |
Sbjct 55827 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 55768
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| || ||| | || ||||| ||| |||| || || | ||| || || ||
Sbjct 55767 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCCAGGGTGATAGTCTTT 55708
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || |||||||| || ||||||
Sbjct 55707 CCAGTGAGGGTCTTTACAAAGATCTGCATA 55678
>seq3221
Length=646307
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| |||| | | ||| | ||||||||| || || || || ||||| |||||
Sbjct 290354 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCA 290413
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | || | || || | |||||||||||| | |||||||| || || || ||||
Sbjct 290414 AGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGA 290473
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || ||||| ||| ||| | || || || || | || ||
Sbjct 290474 ATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 290533
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| ||||| || || || || || ||||| || |||||
Sbjct 290534 TCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 290580
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| |||||||| || ||||| ||||| ||||| || | | |||| |||| ||
Sbjct 219507 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 219566
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278
|| |||||| | || | | || || || |||||| ||||| || || ||| ||
Sbjct 219567 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTATCCTGAATCTT 219626
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
||| ||| ||| | || || ||||| | | || || || | ||||| || || || |
Sbjct 219627 TGC-CTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAG 219685
Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363
||| ||| || ||||||||||||||
Sbjct 219686 TCAAAGTCTTGACAAAAATTTGCAT 219710
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||| | | || | ||| | ||| | |||||| |||||||| ||||||||||||
Sbjct 261574 TGCCACCACGGAGCCTGAGAACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGG 261633
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| | | ||||||| | ||| || || ||| | |||| | || |||||| |
Sbjct 261634 CCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 261693
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| ||||| || ||||| || ||| ||| || | || || || ||| | || |
Sbjct 261694 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGA 261753
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | |||||| || || || ||||| ||||| || || || |||||
Sbjct 261754 CCTCGAGGGTAATCGTCTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 261802
>seq5889
Length=513596
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||| |||| | || || | |||||| || || || || || |||||||||||
Sbjct 197802 TGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG 197743
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | || | || || | || ||||||||| | |||||||| || ||||| |
Sbjct 197742 CGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCG 197683
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
|||| ||||| ||||| || ||| ||| || | || || || ||| | || |
Sbjct 197682 GAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGA 197623
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | |||||| || || || || || ||||| || || || |||||
Sbjct 197622 CCTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 197574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362113364310015
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