Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7271 98.7 7e-16 seq3221 98.7 7e-16 seq5889 89.7 4e-13 >seq7271 Length=339586 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || ||| Sbjct 98600 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 98541 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || || | || | | ||| ||||| ||| || ||||| ||||| | Sbjct 98540 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 98481 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| ||| | || || || ||||| || |||||| Sbjct 98480 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTTTA 98421 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| ||||| || ||||| Sbjct 98420 CCAGTCAGGGTTTTCACAAATATCTGCAT 98392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || ||||| ||||| || | || | ||||| Sbjct 99285 AACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGCAAGGGTCCTACCATCTTC 99226 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | ||||| | || |||||| ||||| || || || || Sbjct 99225 AAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTG 99166 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | |||||||| || | |||| || || || || ||||| || Sbjct 99165 GATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTCCACCTCCAAAGTGATGGTCTT 99106 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| || |||||| Sbjct 99105 CCCAGTCAAAGTCTTCACAAAGATCTGCATA 99075 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || |||||||| || |||| | | | ||||| Sbjct 95187 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCTTCA 95128 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | ||||| | || || ||| || || || || ||||| | Sbjct 95127 AGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGA 95068 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || |||| || || || || || |||||| Sbjct 95067 ATCTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTTA 95008 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| |||||||| |||||| Sbjct 95007 CCAGTCAGGGTTTTCACAAAAATCTGCATA 94978 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | || ||| || || ||||| || ||||| || || || ||||||||||| Sbjct 99530 CCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCA 99471 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| | ||||| | || ||||| || | ||||| | || ||||| |||| Sbjct 99470 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 99411 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || || ||| ||| ||| | || || || || | | ||||| Sbjct 99410 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 99351 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || ||||| || || ||||| || |||||||||||||| Sbjct 99350 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 99304 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || || Sbjct 94959 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 94900 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | | ||| ||||| ||| || ||||| || || | Sbjct 94899 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 94840 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| || |||| || || | ||||||||| || Sbjct 94839 ATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTT 94780 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| |||||||| Sbjct 94779 CCAGTGAGGGTCTTTACAAAGATTTGCAT 94751 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || || || || ||||| ||| || | || | ||||| Sbjct 99056 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 98997 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | | || ||||| || || ||||| ||||| | Sbjct 98996 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 98937 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| | || || ||||| | | || || |||||||||||||| || Sbjct 98936 ATCTTAGCT-TTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTT 98878 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || ||||| ||||||||| Sbjct 98877 GCCAGTAAGAGTCTTAACAAAGATTTGCATA 98847 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || ||| Sbjct 55887 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 55828 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || || | || | | ||| ||||| ||| || ||||| || || | Sbjct 55827 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 55768 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| ||| |||| || || | ||| || || || Sbjct 55767 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCCAGGGTGATAGTCTTT 55708 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||| || |||||| Sbjct 55707 CCAGTGAGGGTCTTTACAAAGATCTGCATA 55678 >seq3221 Length=646307 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| | | ||| | ||||||||| || || || || ||||| ||||| Sbjct 290354 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCA 290413 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | || || | |||||||||||| | |||||||| || || || |||| Sbjct 290414 AGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGA 290473 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||||| ||| ||| | || || || || | || || Sbjct 290474 ATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 290533 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| ||||| || || || || || ||||| || ||||| Sbjct 290534 TCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 290580 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || ||||| ||||| ||||| || | | |||| |||| || Sbjct 219507 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 219566 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | || | | || || || |||||| ||||| || || ||| || Sbjct 219567 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTATCCTGAATCTT 219626 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || || ||||| | | || || || | ||||| || || || | Sbjct 219627 TGC-CTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAG 219685 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||| || |||||||||||||| Sbjct 219686 TCAAAGTCTTGACAAAAATTTGCAT 219710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || | ||| | ||| | |||||| |||||||| |||||||||||| Sbjct 261574 TGCCACCACGGAGCCTGAGAACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGG 261633 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | ||||||| | ||| || || ||| | |||| | || |||||| | Sbjct 261634 CCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 261693 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| || ||||| || ||| ||| || | || || || ||| | || | Sbjct 261694 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGA 261753 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||| || || || ||||| ||||| || || || ||||| Sbjct 261754 CCTCGAGGGTAATCGTCTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 261802 >seq5889 Length=513596 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | || || | |||||| || || || || || ||||||||||| Sbjct 197802 TGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG 197743 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || | || || | || ||||||||| | |||||||| || ||||| | Sbjct 197742 CGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCG 197683 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| ||| || | || || || ||| | || | Sbjct 197682 GAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGA 197623 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||| || || || || || ||||| || || || ||||| Sbjct 197622 CCTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 197574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362113364310015