Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq12505 96.9 3e-15 seq7271 93.3 3e-14 >seq12505 Length=74167 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| | |||| ||| | ||| |||||||||||||| || ||||| | Sbjct 8000 TTCCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTG 7941 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| || | || |||| |||||||| ||| |||| ||||||||||||||| | Sbjct 7940 CAAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCCGGAG 7881 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 7880 GAATGCCTTCCTTGTC 7865 >seq7271 Length=339586 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| ||||||||||| || || | || | | || || Sbjct 99056 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 98997 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| | ||||| |||||||| || || | ||| || ||||| | Sbjct 98996 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 98937 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | | |||||| | ||| ||| | ||||||||| || Sbjct 98936 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 98877 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || ||||| |||||||| Sbjct 98876 CCAGTAAGAGTCTTAACAAAGATTTGCAT 98848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414497440381510