Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5601 111 1e-19 seq5512 102 7e-17 >seq5601 Length=566945 Score = 111 bits (122), Expect = 1e-19 Identities = 369/568 (65%), Gaps = 7/568 (1%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || || || ||||| ||||| | ||||||||||| ||||||||||| || | Sbjct 476390 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 476449 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | ||||| |||||||| | ||| || ||||| | ||||||||| || ||| || |||| Sbjct 476450 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGC-GCAGAAACTACCC 476508 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || ||||| ||||| || ||||||||||||| || || | | | | | Sbjct 476509 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATG---TCTCC 476565 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | || ||||| ||| |||||| | || |||| |||||| || |||| Sbjct 476566 GAGCCGTCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 476625 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 | ||| |||||| | ||||| | || | || || || |||| || || Sbjct 476626 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTA-GAAGGAG 476684 Query 13442 CTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 | | |||||||| || || || || || || || |||||||| || || || | || Sbjct 476685 CGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGC 476744 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 ||| || || || ||||| || || | || | ||||||| || || ||||| Sbjct 476745 CTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTC 476804 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT 13620 || || || || || || | |||| | || || | ||| |||| | | | Sbjct 476805 CGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGA 476864 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 | ||| | | | || | || | || |||||||| | |||||||| ||||| | Sbjct 476865 TTCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTC 476924 Query 13681 AGCCTTCTTATACATCATCCATATATCC 13708 || ||||| ||||| ||| || ||| Sbjct 476925 GGCTTTCTTGTACATTTCCCAGATTTCC 476952 >seq5512 Length=582012 Score = 102 bits (112), Expect = 7e-17 Identities = 311/471 (66%), Gaps = 15/471 (3%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || || || ||||| ||||| | ||||| |||| |||||||||||||| | Sbjct 61180 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTTGTCTCGCGAGATTAGCTCGTTTGAGA 61239 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 ||||| |||||||| | ||| || ||||| | ||||||||| || ||| || ||| Sbjct 61240 TGGTTAGCCCCGGCATTAACCCACGCTTTTTTAACCAAAATATCGC-GCAGAAACTGCCC 61298 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT-ACTATT 13320 || |||||||| ||||| || ||||||||||||| || || ||| | | | Sbjct 61299 GAGAAAAATATCCCTTCCACACAAGCAAACGCTATCAGTCTCTC------CGTGAATGTC 61352 Query 13321 T--TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | | || ||| | |||| |||||| | ||| ||||| ||| || || || Sbjct 61353 TCCGAGCCGTCGATCTAATTTCGGGCCCAATCTGCCTTTTG-GCAACTCACGGCACCGTT 61411 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTG-TCTAAAATATAAGTATCTATCAA 13437 || || ||| |||||| | ||||| | | | | | || ||||| |||| || Sbjct 61412 TCAATGGCGCGAAATAAGCGGCTCTTTTCGTCAGAGTTTTTTTATGTAAGTTTCTA-GAA 61470 Query 13438 TAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 ||| | |||||||| || || | || | || || |||||||| | || || | Sbjct 61471 GGAGCGAGTACATTTCGGAGTGGACGTTCTTGATGGCGATTTGGAAGCTGTAGAAGGCAC 61530 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 ||||| | || || ||||| ||||| |||| | ||||||| || || | Sbjct 61531 GCGCCTCGAAGACATGGACTTCTTTCATGAATCTGGCTGCGAGGTTTTCGAGGACGATTC 61590 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGT 13607 |||| ||||| ||||| || || | ||| | || || | ||| |||| Sbjct 61591 CGTCCGAGGCAGCGAAAAAGGCGAGCACGTGTGTGATGAAGTGTTTCTCGT 61641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430904057500830