Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq13804 107 2e-18 seq9249 100 2e-16 seq5889 96.9 3e-15 seq7271 89.7 4e-13 seq3221 89.7 4e-13 >seq13804 Length=830140 Score = 107 bits (118), Expect = 2e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| ||||||| |||||||| ||| || | Sbjct 395777 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 395718 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 395717 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 395658 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || || |||| |||| ||||| || ||||| || ||||| | ||||||| Sbjct 395657 GTCG--ATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTC 395600 Query 48713 ACAAAAATCTGCATC 48727 ||||| ||||||||| Sbjct 395599 ACAAAGATCTGCATC 395585 >seq9249 Length=1184332 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| ||||||| |||||||| || || | Sbjct 868023 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCAGCGAA 867964 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | |||||| ||| || || ||||| | Sbjct 867963 GATCAGCCGCTGCTGGTCCGATGGAATCCCTTCCTTATCCTGGATCTTAGCCTTGACATT 867904 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || |||| |||| ||||| || ||||| || ||||| | ||||||||| Sbjct 867903 GTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCAC 867844 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 867843 AAAGATCTGCATC 867831 >seq5889 Length=513596 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| ||||||||||||||||| || || || ||||||| |||| Sbjct 198005 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGC-AAGAGTACGGCCGTCCTCAAGCT 197947 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | | ||||||||| || | | |||||||||| ||| | Sbjct 197946 GCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCT 197887 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||| | | |||| ||| | || || || || |||| Sbjct 197886 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 197827 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || |||||||||||||| Sbjct 197826 TCAATGTCTTGACAAAAATCTGCAT 197802 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||||| || |||||||| ||||| || |||| || Sbjct 196871 CACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTC 196812 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || ||| || | || | ||||||||| ||| || | | ||||||||| Sbjct 196811 GAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTG 196752 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC-CGTCT-CGACTGTTATGG 48692 || || ||||| | | || ||||| |||| || ||| || || ||| || |||| Sbjct 196751 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCGG-AG-CTCTCGACTTCGAGAGTAATGG 196696 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 | || ||||| || |||||||| || ||||||||||| Sbjct 196695 TCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCGT 196659 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 |||||||| ||||| || ||||||||||||||||| || ||||||| || ||| Sbjct 197092 TGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCGTCCTCGAGTTGC 197033 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | | |||||| ||| ||| | | |||||||||| || || Sbjct 197032 TTTCCTGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTG 196973 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || || || |||| ||| |||| || ||||| || |||| Sbjct 196972 GCCTTGACGTTGTCG--ATCGTGTCGGAGCTCTCAACTTCGAGAGTAATGGTCTTGCCGG 196915 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| || |||||||| Sbjct 196914 TTAGGGTTTTCACGAAGATCTGCAT 196890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TC 48573 ||||| | |||||| || ||||| |||||||||||||| || | ||| || || Sbjct 197785 AACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGC-GTCCTTCCATC 197727 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || || | || ||||||||||| ||| ||| | | ||||||||| Sbjct 197726 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 197667 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||||| | || || |||| ||| ||||| || || || Sbjct 197666 CTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGT 197607 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || || |||||||| Sbjct 197606 CTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 197574 >seq7271 Length=339586 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| |||||||| ||| | |||||||||||||| ||| | | Sbjct 99723 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 99664 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | | |||||||||| ||||| ||| | | Sbjct 99663 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 99604 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | ||| ||| | || |||||||| || || | || ||||| Sbjct 99603 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCAC 99544 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 99543 GAAAATCTGCAT 99532 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| ||||| || | | ||| | ||||| ||||| ||||| | | Sbjct 94714 CTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAA 94655 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | ||||||||| || | | |||||||||| || || |||| | Sbjct 94654 GATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 94595 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||||| || ||| | ||||||||||| ||||||||||| ||||| Sbjct 94594 ATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCAC 94535 Query 48715 AAAAATCTGCATC 48727 ||| || |||||| Sbjct 94534 AAAGATTTGCATC 94522 >seq3221 Length=646307 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||||||||||||| |||||||| || || | ||||| ||||| Sbjct 211412 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTG 211471 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | |||||| ||| ||| || Sbjct 211472 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 211531 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | | |||| ||| | || || ||||| || || Sbjct 211532 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 211591 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||| Sbjct 211592 AAGAGTCTTGACGAAAATCTGCAT 211615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || ||||||||||||||||| ||||| || |||| || || ||||| || | | Sbjct 211881 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCTGCAAAG 211940 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | ||||||||| ||| ||| | | ||||||||| || || ||||| | | Sbjct 211941 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 212000 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || || || |||| |||| |||| || || || || |||||||| ||||||| Sbjct 212001 TCG--ATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCA 212058 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 212059 CAAATATCTGCATC 212072 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || | || || || ||||| ||| || | Sbjct 220202 CTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAA 220261 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||||||| || | | ||||||||| || || ||| | | Sbjct 220262 GATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 220321 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||| |||| || || ||||| ||||| || |||||| Sbjct 220322 GTCG--ATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTC 220379 Query 48713 ACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 220380 ACAAAGATCTGCAT 220393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || ||||||| |||||||| || || | Sbjct 291073 CTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 291132 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| ||| || | | |||||||| ||| ||| ||||| | Sbjct 291133 GATAAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACATT 291192 Query 48655 CGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | ||||| |||| || ||| || | |||| || || ||||| || || || |||||| Sbjct 291193 GTCGATGGTGTCGG-AG-CTCTCGACTTCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTC 291250 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 291251 ACGAAGATCTGCAT 291264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421174626404915