Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7193 122 5e-23 seq12026 113 2e-20 seq8762 111 8e-20 seq5945 111 8e-20 seq12360 109 3e-19 seq11470 109 3e-19 seq10026 109 3e-19 seq6114 107 1e-18 seq6445 105 3e-18 seq8216 104 1e-17 seq5800 104 1e-17 seq5767 100 1e-16 seq7036 95.1 6e-15 seq1 86.0 3e-12 >seq7193 Length=345723 Score = 122 bits (134), Expect = 5e-23 Identities = 89/103 (86%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 11428 GAAATATAGAATT-AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||| | ||||| || |||||| ||||||||||||| | | |||||||| ||||||| Sbjct 232870 GAAAAACGGAATTGAAAAAAAAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTT 232929 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| ||||||||||||||| |||| Sbjct 232930 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 232972 >seq12026 Length=924662 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| | ||||||||| || |||||||| | | |||||||| ||||||||||||||||| Sbjct 799826 ATTGAAAAAAAATCATTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 799767 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 799766 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 799734 >seq8762 Length=228240 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| || ||| |||||||||| | | |||||||||||||||||||||||||||||| Sbjct 214697 AAAACATTAAAATTTTGGCCCATGCAGGTCTCGAACCTTCGACCTTCGCGTTATTAGCAC 214638 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 214637 GACGCTCTAACCAACTGAGCTAATAGGCC 214609 >seq5945 Length=504005 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 485309 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 485250 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 485249 CTGAGCTAATGGGCC 485235 >seq12360 Length=898963 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 241964 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 242023 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 242024 AACTGAGCTAATAGGCC 242040 >seq11470 Length=969366 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 576587 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 576646 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 576647 CAACTGAGCTAATAGGCCG 576665 >seq10026 Length=1089096 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 687865 AAAAATTGATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 687924 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 687925 GCTCTAACCAACTGAGCTAATAGGCCG 687951 >seq6114 Length=289153 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 15147 AAAAAATTACACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 15088 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 15087 GCTCTAACCAGCTGAGCTAATAGGCC 15062 >seq6445 Length=439124 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 282527 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 282468 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 282467 TGAGCTAATAGGCCG 282453 >seq8216 Length=257100 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 35127 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 35068 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 35067 TGAGCTAATAGGCC 35054 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 36182 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 36123 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 36122 TGAGCTAATAGGCC 36109 >seq5800 Length=1605952 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| | | ||||||||| | | |||||||| |||||||| ||||||||||||||||| Sbjct 1266117 AAAATAATAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCTCGTTATTAGCACGACGC 1266176 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 1266177 TCTAACCAACTGAGCTAATAGGCC 1266200 >seq5767 Length=536903 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 276204 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 276263 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 276264 TGAGCTAATAGGCC 276277 >seq7036 Length=357795 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 82552 TGGCCCATGCTGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 82493 Query 11516 TGAGCTAATGGGCC 11529 || |||||| |||| Sbjct 82492 TGGGCTAATAGGCC 82479 >seq1 Length=1812957 Score = 86.0 bits (94), Expect = 3e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| |||| ||| |||||| | | |||||||| ||||||| |||||||| Sbjct 745222 ATTAATAATT--TCAACTTGACCCATGCAGGTCTCGAACCTGTGACCTTCAGGTTATTAG 745165 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| ||||||| ||||||| ||| || Sbjct 745164 CACGACGCTCTTACCAACTAAGCTAATAGGCAGT 745131 Score = 86.0 bits (94), Expect = 3e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| |||| ||| |||||| | | |||||||| ||||||| |||||||| Sbjct 747750 ATTAATAATT--TCAACTTGACCCATGCAGGTCTCGAACCTGTGACCTTCAGGTTATTAG 747693 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| ||||||| ||||||| ||| || Sbjct 747692 CACGACGCTCTTACCAACTAAGCTAATAGGCAGT 747659 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261443667028540