Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14026 147 3e-31 seq4107 147 3e-31 seq1470 131 3e-26 seq8028 104 4e-18 >seq14026 Length=794860 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| || ||||| || ||||| | ||||| |||||| Sbjct 215255 GATAACATTCAGGGGATCACAAAGCCGGCAATCCGGCGGCTGGCGAGGCGTGGCGGAGTC 215196 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || | || || |||| ||| | ||||| |||||||| | || Sbjct 215195 AAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTAAAGATCTTTTTGGAG 215136 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | || || ||||||||| ||||||||||||||| || Sbjct 215135 AACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGACTGTCACCGCC 215076 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| ||||| | || ||| | | |||| ||||| || |||| Sbjct 215075 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACCCTTTACGGTTTCGGTGGTTA 215017 >seq4107 Length=619127 Score = 147 bits (162), Expect = 3e-31 Identities = 194/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| |||||||| || || ||||| |||||||| || Sbjct 416111 CGCCAAGCGTCACCGTAAGGTGCTTCGCGATAACATTCAGGGTATCACAAAGCCAGCAAT 416052 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||| | ||||||||||||||| || ||| ||| |||| || |||| Sbjct 416051 CCGGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGCTTGATCTACGAGGAGAC 415992 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||| ||| | ||| ||| |||| ||| || | ||| || || Sbjct 415991 ACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGA 415932 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || ||| | ||||| |||| || || | || | || || Sbjct 415931 GCACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG 415872 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | ||||| ||||| |||||| Sbjct 415871 CAGGACTCTCTATGGATTTGGGGGTTAAT 415843 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 114615 GCAAAGCGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCCGCAATC 114674 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||| | ||||| || |||||| || ||| ||| |||| || |||| Sbjct 114675 CGGCGTCTGGCTCGTAGGGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACA 114734 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||||||| | ||| ||| |||| || || | || || ||| Sbjct 114735 CGTGGCGTTCTCAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGAG 114794 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| | |||||||| || | ||||| |||| || || | || | || ||| Sbjct 114795 CACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCAAGAGGCAGGGC 114854 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 114855 AGGACTCTCTACGGGTTTGGTGGTTAA 114881 >seq1470 Length=29576 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 11448 GCAAAGCGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCCGCAATC 11507 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||| | ||||| || |||||| || ||| ||| |||| || |||| Sbjct 11508 CGGCGTCTGGCTCGTAGGGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACA 11567 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||||||| | ||| ||| |||| || || | || || ||| Sbjct 11568 CGTGGCGTTCTCAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGAG 11627 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| | |||||||| || | ||||| |||| || || | || | || ||| Sbjct 11628 CACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCAAGAGGCAGGGC 11687 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 11688 AGGACTCTCTACGGGTTTGGTGGTTAA 11714 >seq8028 Length=1293725 Score = 104 bits (114), Expect = 4e-18 Identities = 186/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || |||||||| || || ||||||||||| ||||| Sbjct 341747 GCCAAGAGGCATCGCA-AGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGCTAT 341689 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| | | || || || ||| | || || | |||| || |||| Sbjct 341688 TCGTCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGAC 341629 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||| | ||| ||| || | |||||| | ||| || || Sbjct 341628 GCGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA 341569 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| |||||||| |||| ||||| | || | || || Sbjct 341568 GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG 341509 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | ||||| ||||| ||| || Sbjct 341508 CAGGACTCTCTATGGGTTTGGTGGTTGAT 341480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061563111095