Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq6848 531 6e-146 seq10805 232 8e-56 seq8585 107 2e-18 >seq6848 Length=375620 Score = 531 bits (588), Expect = 6e-146 Identities = 712/987 (72%), Gaps = 9/987 (1%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||||||||||||||| || Sbjct 331159 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 331218 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | | | || || || || || ||| | || ||||| ||| ||||| Sbjct 331219 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCT-CTCCT 331277 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| ||||| ||||| || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 331278 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 331337 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 331338 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 331397 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || | | || || ||||| ||||| || |||||||| || || || || Sbjct 331398 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 331457 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 331458 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 331517 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 || || ||| | |||||||| ||| ||||| ||||| ||||| | ||||| ||| Sbjct 331518 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCT 331577 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 331578 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 331637 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 331638 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 331697 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 ||||| ||| ||| ||||| ||| | ||||| || || |||||||| ||||| ||| Sbjct 331698 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 331757 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGC 171325 || | || || ||| | | ||||| || || || || || || | || || Sbjct 331758 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 331817 Query 171326 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 171385 || | ||||| ||||| |||||||| ||||| || || |||||||| || || || || Sbjct 331818 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 331877 Query 171386 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 171445 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| ||| Sbjct 331878 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 331937 Query 171446 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 171505 | | |||||||| || | ||||| || || | ||||| | || ||||| |||||| Sbjct 331938 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 331997 Query 171506 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACC 171561 | || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 331998 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 332057 Query 171562 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 171621 |||| ||| || |||| | || |||||||| |||||||||||||||||| | || Sbjct 332058 ----TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 332113 Query 171622 TGCACACAACTTCCCACTAGACCTAGC 171648 ||| || |||||||| ||||||||||| Sbjct 332114 TGCTCATAACTTCCCTCTAGACCTAGC 332140 Score = 531 bits (588), Expect = 6e-146 Identities = 712/987 (72%), Gaps = 9/987 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||||||||||||||| || Sbjct 360610 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTG 360551 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | | | || || || || || ||| | || ||||| ||||||||| Sbjct 360550 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 360491 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| ||||| ||||| || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 360490 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 360431 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 360430 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 360371 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || | | || || ||||| ||||| || |||||||| || || || || Sbjct 360370 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 360311 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 360310 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 360251 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 || || ||| | |||||||| ||| | ||| ||||| ||||| | ||||| ||| Sbjct 360250 CTGGGTATGCGTCCTTGGATTGCTGTTG-ATATTCAGCTCCTGTTGCAGCAGCGACTGCT 360192 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 360191 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 360132 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| |||||||||||| | || ||||| || || |||||||| || |||||||| Sbjct 360131 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 360072 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 ||||| ||| ||| ||||| ||| | ||||| || || |||||||| ||||| ||| Sbjct 360071 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 360012 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGC 171325 || | || || ||| | | ||||| || || || || || || | || || Sbjct 360011 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 359952 Query 171326 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 171385 || | ||||| ||||| |||||||| ||||| || || |||||||| || || || || Sbjct 359951 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 359892 Query 171386 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 171445 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| ||| Sbjct 359891 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 359832 Query 171446 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 171505 | | |||||||| || | ||||| || || | ||||| | || ||||| |||||| Sbjct 359831 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 359772 Query 171506 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACC 171561 | || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 359771 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 359712 Query 171562 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 171621 |||| ||| || |||| | || |||||||| |||||||||||||||||| | || Sbjct 359711 ----TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 359656 Query 171622 TGCACACAACTTCCCACTAGACCTAGC 171648 ||| || |||||||| ||||||||||| Sbjct 359655 TGCTCATAACTTCCCTCTAGACCTAGC 359629 >seq10805 Length=1012358 Score = 232 bits (256), Expect = 8e-56 Identities = 500/750 (67%), Gaps = 21/750 (3%) Strand=Plus/Minus Query 172083 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTT 172142 |||| ||||| || | || || | || ||||| |||||||||||| | | || ||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 172143 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATT 172202 || |||| | ||| | || ||||| || ||| |||||||||| || ||| Sbjct 50146 GAACTTGCTCGCTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATT 50087 Query 172203 GCAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCA 172262 || || || | || || || |||||| |||||||| | |||||||||| || Sbjct 50086 GCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 50027 Query 172263 CCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAAT 172322 ||| |||||||| || || || ||||| | || | || | || || || || ||| Sbjct 50026 CCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAAT 49967 Query 172323 ATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTA 172382 || | || || |||||||||||||| || || ||| || | || | || | ||| Sbjct 49966 TGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTA 49907 Query 172383 TGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACT 172442 |||||||| ||||| || || ||| | || || || | |||||| | Sbjct 49906 TGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGA---------------T 49862 Query 172443 GAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACT 172502 | | | | | ||| | || ||| | || || | || || || | |||||||| Sbjct 49861 G--GTGATGGTGCAAAC----ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACC 49808 Query 172503 TATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAAC 172562 ||| ||| | || |||||| | || ||||| || || ||||| | || ||||| || Sbjct 49807 TATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAAT 49748 Query 172563 AAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCT 172622 ||| | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 49747 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 49688 Query 172623 ATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATA 172682 | || | || || || || || ||||| | || || ||||| || || || || || Sbjct 49687 CTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATC 49628 Query 172683 AGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAA 172742 | ||||| ||||| || || ||||| || |||||||| || || |||||| | || || Sbjct 49627 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAG 49568 Query 172743 GGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAA 172802 ||||| | || |||||| | || ||||| || ||||| ||| || | ||||| || Sbjct 49567 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 49508 Query 172803 GAAGTCTTGCCACGAGGCAACGCACTATAA 172832 || || | || || || ||||| || ||| Sbjct 49507 GAGGTTCTACCCCGTGGAAACGCTCTTTAA 49478 >seq8585 Length=236491 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 171966 AACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 172025 ||||| ||||| || ||||| || || |||| | || | | | ||| | | ||||| Sbjct 27782 AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTA 27723 Query 172026 CTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 172085 |||||||| ||||| |||||||||||| || || |||| ||||||||| || || ||| Sbjct 27722 CTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGG 27663 Query 172086 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCAT 172129 | ||||| || | || || | || ||||| ||||||||||| Sbjct 27662 ACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCAT 27619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570162480510600