Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9360 154 2e-32 seq5601 152 6e-32 seq5512 123 3e-23 seq5924 91.5 2e-13 seq5989 87.8 2e-12 >seq9360 Length=2047533 Score = 154 bits (170), Expect = 2e-32 Identities = 407/615 (66%), Gaps = 10/615 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || |||||||||||||| |||||||| |||| || | ||||| || | Sbjct 1278024 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1277965 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCA 33414 | || | ||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 1277964 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 1277906 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33471 || ||||| || || || || |||||| || || | |||||| | || | | | Sbjct 1277905 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1277846 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 1277845 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 1277789 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 1277788 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 1277729 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 1277728 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 1277669 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTC 33710 |||| | ||| || || || || | | |||| || | || || || || ||||| Sbjct 1277668 TCGGCGACCTGGACCTCCGT-CATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTC 1277610 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 1277609 GGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGC 1277550 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 1277549 CTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTC 1277490 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 || || || ||||| | ||| || | || || || ||||| || ||||| || Sbjct 1277489 GGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATC 1277430 Query 33891 TGGATTTGGTGCAAG 33905 |||||||| || || Sbjct 1277429 GGGATTTGGGGCTAG 1277415 >seq5601 Length=566945 Score = 152 bits (168), Expect = 6e-32 Identities = 387/586 (66%), Gaps = 6/586 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || || || |||| ||||| ||||| || | Sbjct 476390 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 476449 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 476450 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTACCCG 476509 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGC 33472 | ||||| || ||||| || |||||| || || |||||||| | || | | | || Sbjct 476510 AGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 476569 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| ||| | |||||||||||||| || || || |||| |||||| | Sbjct 476570 CGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAA 476626 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 476627 AGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCG 476686 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||||||| || || ||||| || ||||| || || || |||||||| | |||| Sbjct 476687 AGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCT 476746 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 ||| | || |||||| | || | | || | ||||| || |||||||| Sbjct 476747 CGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCCG 476806 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33772 ||| || || || || | || || | || || | ||| ||||| | ||||| | Sbjct 476807 AGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATT 476866 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| | ||| || | || | || || || ||| | ||||||||||| || || | Sbjct 476867 CCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGG 476926 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 | || || ||||| | |||||| || || |||||||| || || Sbjct 476927 CTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 476972 >seq5512 Length=582012 Score = 123 bits (136), Expect = 3e-23 Identities = 383/587 (65%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || || | ||||| ||||| ||||| || | Sbjct 61180 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTTGTCTCGCGAGATTAGCTCGTTTGAGA 61239 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 || || || ||||||| ||||||||||| | ||||||||| | ||| || | Sbjct 61240 TGGTTAGCCCCGGCATTAACCCACGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCG 61299 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC--TCCATAAC-CGGCGC 33472 | || || || ||||| || |||||| || || |||||||| | || | | | || Sbjct 61300 AGAAAAATATCCCTTCCACACAAGCAAACGCTATCAGTCTCTCCGTGAATGTCTCCGAGC 61359 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||| | ||| | |||||||| ||||| || || || |||| |||||| | Sbjct 61360 CGTC---GATCTAATTTCGGGCCCAATCTGCCTT-TTGGCAACTCACGGCACCGTTTCAA 61415 Query 33533 TGGCATTAAAGAGATAGtttttttCATTA-CTATCTTTAACATAAGTATCGATCAAAAGA 33591 |||| ||| | | | ||||| | | | ||| | ||||| || | | || Sbjct 61416 TGGCGCGAAATAAGCGGCTCTTTTCGTCAGAGTTTTTTTATGTAAGTTTCTAGAAGGAGC 61475 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 |||||||| || || | ||| | ||||| || || || | |||||| | ||| Sbjct 61476 GAGTACATTTCGGAGTGGACGTTCTTGATGGCGATTTGGAAGCTGTAGAAGGCACGCGCC 61535 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 ||| | || |||||| | |||| | || | ||||| || |||||||| Sbjct 61536 TCGAAGACATGGACTTCTTTCATGAATCTGGCTGCGAGGTTTTCGAGGACGATTCCGTCC 61595 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 ||| || ||||| || | || ||| | || || | ||| ||||| | ||||| Sbjct 61596 GAGGCAGCGAAAAAGGCGAGCACGTGTGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 61655 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | ||| | ||| || | | | || | || || | ||||||||||| || || Sbjct 61656 TCCCACTGGCGGATGTCCTGCAACAGGTCAAGCTCCTCTGCCGTCCAAAATGAAGCTTCG 61715 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || || || ||||| | |||||| || || |||||||| || || Sbjct 61716 GCTTTCTTGTACATTTCCCAGATTTCTGGGTACTGGATTGGAAACAT 61762 >seq5924 Length=8700 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 7542 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 7601 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 7602 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 7660 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 7661 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 7720 Query 63790 AAGTTTTAAAACCAAAATA 63808 ||||| || ||||| || Sbjct 7721 GGGTTTTGAAGCCAAAGTA 7739 >seq5989 Length=495927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 124524 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 124465 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 124464 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 124406 Query 63730 ACATGTGCTGAGGTCTTTCAAC 63751 |||| |||||||||||||| || Sbjct 124405 ACATATGCTGAGGTCTTTCTAC 124384 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 135066 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 135007 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | || ||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 135006 GTATGTTTTAA-AGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 134949 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 134948 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 134889 Query 63790 AAGTTTTAAAACCAAAATA 63808 ||||| || ||||| || Sbjct 134888 GGGTTTTGAAGCCAAAGTA 134870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622831059281400