Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq7271 120 3e-22 seq12505 91.5 1e-13 seq6246 89.7 5e-13 seq1669 89.7 5e-13 seq3221 86.0 6e-12 >seq7271 Length=339586 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| || | |||||||| | |||||| | || | ||| | Sbjct 98164 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 98223 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| |||||| ||||| |||||||| || || || || Sbjct 98224 GACACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 98283 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || |||| | ||||||||||| || |||| | | | | |||||||||| Sbjct 98284 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 98343 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || || || || |||| |||||||| | || ||||| |||| Sbjct 98344 ATTCAGAAGGAGTCCACACTCCACCTGGTCCTCCGTCTAAGAGGTGGAA 98392 >seq12505 Length=74167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| ||||| || ||||| ||||| || ||||| |||| | || |||||| | ||| Sbjct 7865 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 7924 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| |||| || || || |||||||||||||| || || || | || ||||||| Sbjct 7925 GATGGCAGAA-CGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCT 7983 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || || ||||||| Sbjct 7984 GAGGCTCAGGGGAGGAA 8000 >seq6246 Length=1554407 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 817696 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 817755 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 817756 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 817815 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 817816 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC 817875 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 817876 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 817907 >seq1669 Length=710980 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 59217 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 59158 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 59157 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 59098 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 59097 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC 59038 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 59037 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 59006 >seq3221 Length=646307 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| ||||| | || || || | |||||| ||||| | || Sbjct 212074 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 212015 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | ||||| ||||| ||||| || || || || || || Sbjct 212014 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 211955 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | | || || ||||||||||| | | | | ||| || Sbjct 211954 CAGCAGCGTCTCATCTTTGCAGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 211895 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||||||||| ||| | ||||| ||||| || ||| | || |||| Sbjct 211894 AACATTCAAAAAGAATCCACTTTGCATCTTGTCCTCAGGCTTCGTGGTGGAA 211843 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||| ||||| |||| || ||| ||||||| ||||| | || Sbjct 220397 CAATATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 220338 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||||||||| | || || ||||| ||||| || ||||| ||||| || Sbjct 220337 CTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 220278 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || | || || | || ||| || ||||||||||||| | | | | ||| || Sbjct 220277 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 220218 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||||| || || || || || |||| || || || || || Sbjct 220217 CAACATCCAGAAGGAGTCAACGCTCCACCTCGTGCTCAGGCT 220176 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826 ||||| | || || ||||| ||||||| || ||||||| |||| | ||| | | Sbjct 219938 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 219879 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 || || || || | ||||| ||||| ||||| |||||||| || || |||| Sbjct 219878 --GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATC 219821 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTAT 26945 |||||||| | || | | ||| |||||| | ||||| | | |||| || |||||| Sbjct 219820 AACAAAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGCCG-CACGTTGGCTGACTAT 219762 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| || ||| | || || ||||| Sbjct 219761 AACATCCAGAAAGAGTCAACTCTTCACCTTGTCCT 219727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478573159378800