Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3221 113 4e-20 seq1028 113 4e-20 seq5889 104 2e-17 seq12505 96.9 3e-15 seq7271 91.5 1e-13 seq13804 82.4 7e-11 >seq3221 Length=646307 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || |||||||| |||| |||||| | | Sbjct 261802 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 261743 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || || || |||||||| || Sbjct 261742 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG 261683 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| |||||||||||||| | | | | | | |||||| ||| Sbjct 261682 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATTACAAC 261623 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 261622 ATCCAAAAAGAATCCAC 261606 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || |||||||| |||| |||||| | | Sbjct 220165 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 220106 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || || || |||||||| || Sbjct 220105 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAAT-CCTCCCGACCAG 220047 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| |||||||||||||| | | | | | | |||||| ||| Sbjct 220046 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGCACCTTGGCCGATTACAAC 219987 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 219986 ATCCAAAAAGAATCCAC 219970 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| ||||| |||| || ||| |||| || ||||||| ||| Sbjct 220397 CAATATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 220338 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||||||||| | || || ||||| ||||| || || || ||||| || Sbjct 220337 CTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 220278 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || ||| |||||||||||||||| | | | | | |||||| Sbjct 220277 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 220218 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 220217 CAACATCCAGAAGGAGTCAAC 220197 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || ||| |||| || ||||||| ||| Sbjct 262034 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 261975 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| ||||| | ||||| ||||| ||||| || || || ||||| || Sbjct 261974 CTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 261915 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || ||| |||||||||||||||| | | | | | |||||| Sbjct 261914 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 261855 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 261854 CAACATCCAGAAGGAGTCAAC 261834 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| ||| | ||||| ||||||||||| | | Sbjct 291264 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 291205 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || || || || || || || Sbjct 291204 GACACCATCGACAATGTCAAGGCGAAGATTCAAGACAAGGAGGGAATCCCCCCGGACCAG 291145 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || ||||| ||||| || | | | | | | |||||| ||| Sbjct 291144 CAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACAAC 291085 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 291084 ATACAGAAGGAGTCAAC 291068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| | || || || | || ||| ||||||| ||| | Sbjct 212074 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 212015 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | ||||| ||||| ||||| || || || || || || Sbjct 212014 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 211955 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | | || |||||||||||||| | | | | | |||||| Sbjct 211954 CAGCAGCGTCTCATCTTTGCAGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 211895 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||||||||||||||| || Sbjct 211894 AACATTCAAAAAGAATCCAC 211875 >seq1028 Length=430 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || |||||||| |||| |||||| | | Sbjct 151 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 210 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || || || |||||||| || Sbjct 211 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG 270 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| |||||||||||||| | | | | | | |||||| ||| Sbjct 271 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGCACCTTGGCCGATTACAAC 330 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 331 ATCCAAAAAGAATCCAC 347 >seq5889 Length=513596 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | ||||| ||||||||||| | | Sbjct 196662 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCC 196721 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 196722 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCAG 196781 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| || || |||||||| | | | | | | |||||| || Sbjct 196782 CAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACAAT 196841 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| ||||| || ||||| | ||| Sbjct 196842 ATCCAAAAGGAATCGACGCTTCATCTTGTG 196871 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| | ||||| ||||||| ||| | | Sbjct 197118 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACCATTACTCTCGAAGTTGAGAGCTCC 197177 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 197178 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 197237 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||||||||| || | | | | | | ||||| ||| Sbjct 197238 CAGAGGCTGATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAAC 197297 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| ||| |||| Sbjct 197298 ATCCAGAAGGAATCAACACTTCA 197320 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | ||||| ||||||| ||| | | Sbjct 196890 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCC 196949 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 196950 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 197009 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||||||||| || | | | | | | ||||| ||| Sbjct 197010 CAGAGGCTGATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAAC 197069 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| ||| |||| Sbjct 197070 ATCCAGAAGGAATCAACACTTCA 197092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| | ||||| ||||||| ||| | | Sbjct 197346 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACCATTACTCTCGAAGTTGAGAGCTCC 197405 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 197406 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 197465 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||||||||| || | | | | | | ||||| || Sbjct 197466 CAGAGGCTGATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAAT 197525 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 197526 ATCCAGAAGGAATCAACTCTTCA 197548 >seq12505 Length=74167 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| ||||||||||||| | || || ||| | ||| Sbjct 7865 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 7924 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| ||| |||| || ||||||||||||||||| || || || |||| || || | Sbjct 7925 GATGGCAG-AACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCT 7983 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 7984 GAGGCTCAGGGGAGGAACTATGAT 8007 >seq7271 Length=339586 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || || | || || || | Sbjct 98620 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 98679 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| || ||||| || || |||||| Sbjct 98680 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 98739 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||||| | || ||||| || ||||||| | | | | | || || ||| Sbjct 98740 CAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 98799 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || |||||||| |||| || ||| Sbjct 98800 ATTCAGAAGGAATCTACCCTTCACTTGGTG 98829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || | |||||||| | || ||| | || || || | | Sbjct 98164 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 98223 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| ||||| || || || || || Sbjct 98224 GACACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 98283 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || |||| | ||||| ||||| || |||| | | | | | ||| |||||| Sbjct 98284 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 98343 Query 24171 ATTCAAAAAGAATCTACA 24188 ||||| || || || ||| Sbjct 98344 ATTCAGAAGGAGTCCACA 98361 >seq13804 Length=830140 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| | || || ||| | | Sbjct 395814 ATGCAGATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCC 395873 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| ||||| || || || || || Sbjct 395874 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 395933 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||||||||| || || || | | | | | | |||||||||| Sbjct 395934 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAAC 395993 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||||| || | || | ||||| | |||| |||||| Sbjct 395994 ATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGA 396041 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || || || || |||| ||| | || || ||| | Sbjct 396041 AATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTC 396100 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | || || ||||| |||||||| || || || || || || Sbjct 396101 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCACCGGACCA 396160 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || ||||||||| ||||| |||| | | | || |||||| || Sbjct 396161 GCAGCGGTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAA 396220 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||| || || || Sbjct 396221 CATTCAAAAGGAGTCCAC 396238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429857847711825