Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq13804 105 5e-18 seq13803 105 5e-18 seq3221 104 2e-17 seq7271 96.9 3e-15 seq12505 93.3 3e-14 seq8940 87.8 1e-12 >seq13804 Length=830140 Score = 105 bits (116), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| ||||| | || | | ||||| | || Sbjct 396244 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGC 396185 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || | |||||| |||||| || | ||||||||||| || || Sbjct 396184 TTGCCGGCGAAGATCAACCGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGGATCTTG 396125 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | |||||| | |||| |||| |||||| || || |||| Sbjct 396124 GC--CTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGG 396067 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 ||| ||| ||||| || ||||||||| Sbjct 396066 TCAACGTCTTGACGAAGATCTGCATT 396041 >seq13803 Length=1821802 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || |||| || |||| ||||| || |||||||| || || ||||||||||| Sbjct 337632 CCCACCACGAAGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGC 337573 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| |||| || | || ||||| || | || || ||||| |||||| || Sbjct 337572 CAAGGTTCGCCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAGGCGCTGCTGGTCCGGTGG 337513 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| || | | ||| || | | | | |||||| || |||| Sbjct 337512 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCAC 337453 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 |||| || ||||| || || || || ||||| || || |||||||| |||| Sbjct 337452 CTCCAACGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTGT 337400 >seq3221 Length=646307 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || || |||||||| ||||||||||| |||||| Sbjct 291038 CCTCCGCGGAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGCC 291097 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || || | ||||||| ||| |||||| || Sbjct 291098 AAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGGG 291157 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | ||| || | | | | |||||| | ||| | Sbjct 291158 ATTCCCTCCTTGTCTTGAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACT 291217 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || ||||| || ||||| ||||| || || |||||||| Sbjct 291218 TCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 291264 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || || |||||||| || || ||||| || ||| Sbjct 290810 CCACCACGGAGCCTGAGGACGAGATGAAGGGTTGACTCCTTCTGGATATTGTAATCAGCC 290869 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| ||| ||||| ||| | || |||| ||| |||||| || Sbjct 290870 AAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 290929 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | ||| || | | | ||||| | ||| Sbjct 290930 ATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTATCGATCGTGTCTGAGCTCTCAACC 290989 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || ||||| || ||||||||||| |||||||| Sbjct 290990 TCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 291036 >seq7271 Length=339586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| ||| | || |||| || || ||||||||||| || ||||| |||||||| Sbjct 98390 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 98331 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | ||||||||| ||| ||||||||| || ||||| || Sbjct 98330 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 98271 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | |||||| | ||| Sbjct 98270 ATCCCTTCCTTGTCCTGAATCTTGGCT--TTGACATTGTCAATGGTGTCGGAGCTTTCCA 98213 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || ||||| || || || || ||||| |||||||| Sbjct 98212 CCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 98164 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || || ||||| || ||||||||||| || | || | ||| Sbjct 98603 AGGACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCC 98544 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || ||| | || |||| || ||||| || | || || ||||| Sbjct 98543 TCTAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCC 98484 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| || || | | | | |||||| | ||| ||||| |||||| | Sbjct 98483 TGAATTTTGGCT--TTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAG 98426 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || ||||| ||||| ||||| ||||||||| Sbjct 98425 TTTTACCAGTCAGGGTTTTCACAAATATCTGCATT 98391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | |||||| ||||||||||| || |||||||| || || Sbjct 56589 CCTCCACGGAGACGGAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCA 56530 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | |||||| || ||| | || | || ||| ||||| || Sbjct 56529 AGAGTCCTTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 56470 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || |||||| | | | | ||||| ||| Sbjct 56469 ATCCCCTCCTTATCCTGGATCTTAGC--CTTCACATTGTCAATTGTGTCCGAACTCTCAA 56412 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||||| || || || || || |||||||||||||| Sbjct 56411 CCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCACAAAAATCTGCAT 56363 >seq12505 Length=74167 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || ||||| ||||||||||| ||||| || || || Sbjct 7998 CCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTGCA 7939 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || ||||||||||| || ||| |||| || | ||| || ||| ||| Sbjct 7938 AGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCCGGAGGA 7879 Query 16829 ACGCCCTCTTTGTC 16842 | ||| || ||||| Sbjct 7878 ATGCCTTCCTTGTC 7865 >seq8940 Length=216051 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA-TTG 16791 || || |||||||||||||| |||||||| ||||| || | ||||||| || ||| Sbjct 153085 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGCGAGTCCAGCCGTCCTCAAAATTG 153144 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTG 16851 |||| || | || |||| | | ||| || || | ||||| ||||| ||| | Sbjct 153145 CTTGCGGGCGAAGATGAGCCTCCGCTGGCCCGGCGGAATCCCCTCCTTGTCCTGAATCTT 153204 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | |||||| | | | | |||||| | |||| ||| ||||||||||| ||||| Sbjct 153205 CGTCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCTGAGTGATGGTTTTCCCGGT 153264 Query 16912 CAGCGTTTTGACAAAAATCTGCATT 16936 | ||| ||||| || ||||| ||| Sbjct 153265 CGACGTCTTGACGAAGATCTGAATT 153289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405014364495850