Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq6848 601 4e-167 seq10805 437 1e-117 seq6804 111 2e-19 seq6913 104 3e-17 >seq6848 Length=375620 Score = 601 bits (666), Expect = 4e-167 Identities = 717/964 (74%), Gaps = 9/964 (1%) Strand=Plus/Plus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| ||||||||||||| ||||||| || ||| | ||| | ||||| Sbjct 331186 AACCGTCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 331245 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || |||| ||| | || | ||||| || ||||| || || || ||||| Sbjct 331246 -TCTGTATTTATTATCGCCTTCATTGCT-CTCCTCCAGTAGATATTGACGGTATTCGTGA 331303 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257 || || | || |||||| | ||||| ||||| || || |||||||| || | || | Sbjct 331304 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTAC 331363 Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317 | || || || || ||| | || || || || || |||||||| ||||| |||||||| Sbjct 331364 TTCTGCA--GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAA 331421 Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTAT 166377 ||| | || || || ||||||| |||| | || | |||||| | | || | | Sbjct 331422 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 331481 Query 166378 GCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 166437 |||||||||||||| |||||| | || ||| || |||||||||||||||||| Sbjct 331482 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 331541 Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 166497 || ||||| || || |||||||||||||| | || || ||| || |||| || ||||| Sbjct 331542 GTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGT 331601 Query 166498 CAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTT 166557 ||||| ||| ||||| | ||||| || || ||| ||| || ||||||| |||| || Sbjct 331602 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 331661 Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617 || ||||| || |||||||||||||| |||||||| ||||| ||| | || ||||| ||| Sbjct 331662 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGT 331721 Query 166618 GTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-T 166676 |||||||| || || || ||| || ||||| || | || || || | | | | | Sbjct 331722 GTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGAT 331780 Query 166677 CCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGA 166736 | | || ||||| |||| ||| ||| || ||||||| || |||||||| ||||| Sbjct 331781 CAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGA 331840 Query 166737 GACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTC 166796 || || || ||||| |||||||| ||||| || || || ||||||||||||| ||| Sbjct 331841 AACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 331900 Query 166797 CTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 166856 |||||||| ||||| || | || |||||||| || || |||||||| || |||||||| Sbjct 331901 TTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTG 331960 Query 166857 GTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 166916 ||| |||||| | ||| ||||||| ||||| |||||| | || |||||||| |||||||| Sbjct 331961 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCA 332020 Query 166917 GTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGC 166976 || | | ||| |||| |||||||| | || || ||||| ||| | | || ||||| Sbjct 332021 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGC 332080 Query 166977 TGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGC 167036 | || ||||||||||| ||||| || ||||||||||| ||||||||||| || || || Sbjct 332081 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 332140 Query 167037 TGCT 167040 |||| Sbjct 332141 TGCT 332144 Score = 601 bits (666), Expect = 4e-167 Identities = 717/964 (74%), Gaps = 9/964 (1%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| ||||||||||||| ||||||| || ||| | ||| | ||||| Sbjct 360583 AACCGTCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 360524 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || |||| ||| | || || ||||| || ||||| || || || ||||| Sbjct 360523 -TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGA 360465 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257 || || | || |||||| | ||||| ||||| || || |||||||| || | || | Sbjct 360464 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTAC 360405 Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317 | || || || || ||| | || || || || || |||||||| ||||| |||||||| Sbjct 360404 TTCTGCA--GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAA 360347 Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTAT 166377 ||| | || || || ||||||| |||| | || | |||||| | | || | | Sbjct 360346 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 360287 Query 166378 GCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 166437 |||||||||||||| |||||| | || ||| || |||||||||||||||||| Sbjct 360286 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 360227 Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 166497 || | ||| || || |||||||||||||| | || || ||| || |||| || ||||| Sbjct 360226 GTTG-ATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGT 360168 Query 166498 CAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTT 166557 ||||| ||| ||||| | ||||| || || ||| ||| || ||||||| |||| || Sbjct 360167 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 360108 Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617 || ||||| || |||||||||||||| |||||||| ||||| ||| | || ||||| ||| Sbjct 360107 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGT 360048 Query 166618 GTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-T 166676 |||||||| || || || ||| || ||||| || | || || || | | | | | Sbjct 360047 GTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGAT 359989 Query 166677 CCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGA 166736 | | || ||||| |||| ||| ||| || ||||||| || |||||||| ||||| Sbjct 359988 CAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGA 359929 Query 166737 GACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTC 166796 || || || ||||| |||||||| ||||| || || || ||||||||||||| ||| Sbjct 359928 AACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 359869 Query 166797 CTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 166856 |||||||| ||||| || | || |||||||| || || |||||||| || |||||||| Sbjct 359868 TTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTG 359809 Query 166857 GTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 166916 ||| |||||| | ||| ||||||| ||||| |||||| | || |||||||| |||||||| Sbjct 359808 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCA 359749 Query 166917 GTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGC 166976 || | | ||| |||| |||||||| | || || ||||| ||| | | || ||||| Sbjct 359748 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGC 359689 Query 166977 TGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGC 167036 | || ||||||||||| ||||| || ||||||||||| ||||||||||| || || || Sbjct 359688 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 359629 Query 167037 TGCT 167040 |||| Sbjct 359628 TGCT 359625 >seq10805 Length=1012358 Score = 437 bits (484), Expect = 1e-117 Identities = 532/725 (73%), Gaps = 0/725 (0%) Strand=Plus/Minus Query 167588 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTT 167647 ||| ||||||| || |||||||| || || | || ||||| || ||| | || |||||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 167648 GAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATT 167707 || | | | || | || ||||| ||||| || || || |||| ||| ||| Sbjct 50146 GAACTTGCTCGCTCGGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATT 50087 Query 167708 GCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCA 167767 ||||| ||||| ||||| || || || ||||| || || ||||| ||||||||||||| Sbjct 50086 GCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 50027 Query 167768 CCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAAC 167827 || |||||||| || ||||||||| ||||| | || || | || || || ||||| Sbjct 50026 CCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAAT 49967 Query 167828 TGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTT 167887 ||||| | ||||| || ||||||||||||||||| ||| | | |||| ||| |||| Sbjct 49966 TGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTA 49907 Query 167888 TCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAAC 167947 | ||| || ||||| | ||| ||||| |||||| | | |||||||||||| |||||| Sbjct 49906 TGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAAC 49847 Query 167948 ACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAAC 168007 || ||| || ||| | | || || | || ||||| ||||| |||||||| |||||| Sbjct 49846 ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAAC 49787 Query 168008 CGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTT 168067 || || ||||||||||| ||||| ||||||| |||||| |||||||| || |||||| Sbjct 49786 CGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 49727 Query 168068 ATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCA 168127 ||| | || || || || | || | |||| ||| || |||| | |||| || || Sbjct 49726 ATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCC 49667 Query 168128 CTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAG 168187 || || || |||||||||||||| || || |||||| | | ||||| || ||||| || Sbjct 49666 CTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAA 49607 Query 168188 TTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCT 168247 ||||| |||||||| || ||||| || || | || || || | ||||| |||||||| Sbjct 49606 TTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCG 49547 Query 168248 CCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAAC 168307 | ||| || || ||||||||| || ||||||| || || || | || | || ||| Sbjct 49546 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAAC 49487 Query 168308 GCTCT 168312 ||||| Sbjct 49486 GCTCT 49482 >seq6804 Length=382778 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 168117 TCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAG 168176 |||| || || || || || |||||||||||||| || || || ||| | | ||||| Sbjct 63708 TCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGA 63649 Query 168177 AGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTG 168236 | ||||| || ||||| | |||||| || ||||| || || | || || || | |||| Sbjct 63648 AAGATCCTGAATTTGAGAATTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTG 63589 Query 168237 CCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGC 168296 | |||||||| | ||| || || ||||||||| || ||||||| || || || | | Sbjct 63588 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 63529 Query 168297 CAAGAGGCAACGCTCT 168312 | | || |||||||| Sbjct 63528 CCCGTGGAAACGCTCT 63513 >seq6913 Length=1432529 Score = 104 bits (114), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 167748 AGTCCAGTTGGTTCTTTGCACCGTCGTTT-GGTGTTGCAGCGATATTTAGATTCCTACTA 167806 |||| |||| ||||||| || |||||| ||||| | |||||||| | ||| | || Sbjct 164059 AGTCTTGTTGATTCTTTGAGCC-TCGTTTTGGTGTAGTGACGATATTTCGGTTCATCCTT 164001 Query 167807 TTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGT 167866 || | || || | |||| ||||| | ||||| || ||||||||||||||||||||| Sbjct 164000 TTTTTCCAAGGGTCTTATAAGTGGACATTAAACCCCTTTCATATGATGGGAGTTGCTGGT 163941 Query 167867 ATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTAT 167926 | |||| | || ||| | ||| || ||||| ||| |||| |||||| | | | Sbjct 163940 GTATTAGGTGCTGTTCAGCTATGTGCTATTCATGGCACTACTATAGAAAATACTTTATTT 163881 Query 167927 GAAGATGGTGA 167937 ||||||||||| Sbjct 163880 GAAGATGGTGA 163870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567126246684000