Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9360 224 1e-53 seq5601 185 1e-41 seq13816 93.3 5e-14 seq13915 89.7 6e-13 seq4107 89.7 6e-13 seq13581 87.8 2e-12 seq8473 86.0 7e-12 seq10471 84.2 2e-11 seq8139 84.2 2e-11 seq12693 82.4 8e-11 >seq9360 Length=2047533 Score = 224 bits (248), Expect = 1e-53 Identities = 596/900 (66%), Gaps = 19/900 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||||| |||||||||||| | |||||||||||||| ||||| |||| Sbjct 1278320 CATAACAGAAGCCTTTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTG 1278261 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC--ACCG 92905 | || ||| | || | | | |||||| | || ||| | ||| Sbjct 1278260 GAGCGAGATCAGCTCCATCCAATCAAAAGGATTCGCCACTCCGTACAGCTTCCCGTACCC 1278201 Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | | | | ||| |||||||| || ||||| |||||||||||| |||||| || | | Sbjct 1278200 A--AGCGCACCCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCA 1278143 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 ||||| || | | ||| || || || || ||| || || ||| |||| || | || Sbjct 1278142 TTCATCCCCACCA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCAC 1278084 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGT 93083 || || |||| | | | ||||| || | | | ||||| | |||| ||| Sbjct 1278083 CGCCTCCTTCACTAACGCCTTCACTCT-CTCCTCGCTTAGCTTTGTCCTCAATAAACTGT 1278025 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 ||| | |||||| || ||| || | ||| || ||||| || |||||||| || || Sbjct 1278024 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1277965 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 ||||||| || || | | || || || |||||||||||||| | |||||| || | Sbjct 1277964 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTG 1277905 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | || || || || |||||| ||||| || | | | || || ||| | | || Sbjct 1277904 AGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG- 1277846 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | |||||| ||||| ||||| |||||| || | || || | || |||| Sbjct 1277845 --CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGA 1277788 Query 93324 TAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | |||| ||| || || | | ||||| || ||| ||||| || || | | || Sbjct 1277787 TGGCGTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCA 1277731 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || |||||||| || |||| ||||| || || |||||||| |||||||| | | Sbjct 1277730 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 1277671 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | || ||| || || || || | |||| || || ||| || || | Sbjct 1277670 CCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGT 1277611 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 |||| ||||| || || || | | ||| | | || || ||||| ||| | | || Sbjct 1277610 CGGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGG 1277551 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 ||||| | | ||||||| |||||||| ||||| || | ||||||||||| |||| Sbjct 1277550 CCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTT 1277491 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 | ||||| |||||||| ||||| || | | | || ||||| || || ||| ||| |||| Sbjct 1277490 CGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGAT 1277431 >seq5601 Length=566945 Score = 185 bits (204), Expect = 1e-41 Identities = 598/913 (65%), Gaps = 19/913 (2%) Strand=Plus/Plus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 |||||||||||||| ||| | || ||||||||||| ||||| |||| || || ||| | Sbjct 476107 TTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAAC 476166 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||| | || || ||| | | | | | ||| Sbjct 476167 TCCATCCAATCAAACGGATTCGTCACGCCGTACACCTTCCCGCACCCGAGCGCACCCAAC 476226 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAG 92979 || ||||| || ||||| |||||||||||| |||||| | | ||||| || | || Sbjct 476227 AACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAAT 476286 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || || || || |||||| || ||| || |||| || | || || || |||| || Sbjct 476287 GCGCAC-GGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTAT 476345 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT--TGTACATTAAGCACGCA 93097 | | || | || | | | ||| || | || | |||||| |||||||| Sbjct 476346 CCCCTTCACGCG-CTCCTCGCTTAATTT-GTTCCTCAGCAAGCTGTACAACAAGCACGCG 476403 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || ||| || | ||||| ||||| || || | ||| || ||| |||| || || Sbjct 476404 AAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGC 476463 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACC 93216 | | || || || || | ||||||||| | ||| |||||||| || || ||||| || Sbjct 476464 ATTAACCCGCGCTTTTTCAACCAAAATATCGC-GCAGAAACTACCCGAGAAGAATATCCC 476522 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||||||| ||||| || | | | || || || | | || | | |||||| Sbjct 476523 TTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG---CCGTCGATCCA 476579 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT-A 93335 |||| ||||||||||| ||||| || || || | ||||| | ||| |||| | Sbjct 476580 ATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATAA 476639 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | ||| ||||| || | | |||||| || || | | || || |||||||| | Sbjct 476640 GCGGCTCT-TTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGG 476698 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| ||||| || || |||||||| |||||||| | || || | || || | Sbjct 476699 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGA 476758 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 |||||| || || | |||| ||||| ||| || || || || || || || | Sbjct 476759 CTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCCGAGGCGGCGAAGA 476818 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573 | || | | ||| | || || |||||||| || | | || ||||| | |||| Sbjct 476819 AGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATTCCCACTGGCGGA 476878 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || | || || ||||| || || | |||||||| || ||||| ||||| ||||| Sbjct 476879 T--GTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 476936 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 ||| ||||| || || | || || |||||||| ||| || || | ||||| | Sbjct 476937 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTTCGGGGT 476996 Query 93694 TAGTAACGGCTCT 93706 ||| | ||||||| Sbjct 476997 TAGCAGCGGCTCT 477009 >seq13816 Length=51330 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 42950 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 42893 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| |||||||||| || Sbjct 42892 CGTGGGTTCAAATCCCACTTCTGACAAATTTTT 42860 >seq13915 Length=807303 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/102 (80%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 526139 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 526082 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| |||| | |||| ||||||| || Sbjct 526081 TTCAAATCCCACAGCTGTCAAAATTTTAT---AATTTTTTTT 526043 >seq4107 Length=619127 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/103 (81%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 140894 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 140837 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 |||||||||| || ||||| |||||||| | ||||| || || Sbjct 140836 GCGTGGGTTCAAATCCCACTTCTGACAAA-TGTTATTTGATTT 140795 >seq13581 Length=835886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/96 (81%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 281500 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 281443 Query 126324 TGGGTTCGAACCCCACACCTGACAAA--TTATTATT 126357 ||||||| || |||||| ||| |||| ||||| || Sbjct 281442 TGGGTTCAAATCCCACAGCTGTCAAAACTTATTTTT 281407 >seq8473 Length=1234240 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 639875 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 639818 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 639817 GCGTGGGTTCAAATCCCACTTCTGACA 639791 >seq10471 Length=1991341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 1293429 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 1293372 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||||| || ||||| |||||| || || Sbjct 1293371 GCGTGGGTTCAAATCCCACTTCTGACAGATCAT 1293339 >seq8139 Length=1267808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | Sbjct 1233222 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGG 1233281 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| |||||||||| Sbjct 1233282 TGTGGGTTCAAATCCCACTTCTGACAAATT 1233311 >seq12693 Length=1874079 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1663850 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1663907 Query 126325 GGGTTCGAACCCCACACCTGACAA 126348 |||||| || |||||| ||| ||| Sbjct 1663908 GGGTTCAAATCCCACAGCTGTCAA 1663931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556756980264600