Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq7271 95.1 9e-15 >seq7271 Length=339586 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || ||||| ||||||||| | ||| || | Sbjct 98848 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 98907 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || ||| || || || || | || |||| Sbjct 98908 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 98967 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || |||||| || || | ||||| |||||| Sbjct 98968 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTACAAT 99027 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || |||||||| |||| | || | || ||||| Sbjct 99028 ATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAGG 99074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || ||||||||| | || |||| | | Sbjct 94751 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAAAGCTCG 94810 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || |||||| ||||| || || | || | |||| Sbjct 94811 GACACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACCAG 94870 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || |||||||||||||||||||| || ||| | || | || || ||||| Sbjct 94871 CAAAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGACGCACACTTGCAGACTACAAC 94930 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 || ||||||||||| || |||||| ||||| | ||| Sbjct 94931 ATCCAGAAGGAATCAACCCTTCATTTGGTACTTCGT 94966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | || | |||| ||||| | ||||||||||| |||||||| || Sbjct 56456 GATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAG 56515 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || ||| | || |||||||| || |||||||| || ||||| ||| | || | Sbjct 56516 GATGGAAGGACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTC 56575 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 56576 CGTCTCCGTGGAGG 56589 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | ||||| | || || ||||| || ||| ||||| || | | Sbjct 98391 AATGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGAAGTTGAGAGCTC 98450 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | || |||||| || || || || | || | |||| Sbjct 98451 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCA 98510 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || || |||||||| || ||||||||||| ||| | || | || || ||||| Sbjct 98511 GCAAAGGCTCATCTTTGCCGGTAAACAACTAGAGGATGGACGCACACTTGCAGACTACAA 98570 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||| || |||||| |||| Sbjct 98571 CATCCAGAAGGAATCAACCCTTCATTTGGT 98600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358059701304910